BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD08FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1065 1275 0.0
>3x_Contig1065
Length = 3891
Score = 1275 bits (643), Expect = 0.0
Identities = 695/707 (98%), Gaps = 4/707 (0%)
Strand = Plus / Minus
Query: 90 aaactttgggtcatttaaatatttacaatcattatgattactttttggatgttaattatg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 aaactttgggtcatttaaatatttacaatcattatgattactttttggatgttaattatg 3223
Query: 150 tggtaatagtctatttacgatttaagcttttgaattttagctaacatacctgatagttga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222 tggtaatagtctatttacgatttaagcttttgaattttagctaacatacctgatagttga 3163
Query: 210 agatgagtcccgacaccttcaagaattctcatatgtgtaaagccgatttccttgatcatc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3162 agatgagtcccgacaccttcaagaattctcatatgtgtaaagccgatttccttgatcatc 3103
Query: 270 tccaatctaaccgtttccttaacttcatcgagatttttcattactctgaaacaagttatc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3102 tccaatctaaccgtttccttaacttcatcgagatttttcattactctgaaacaagttatc 3043
Query: 330 actatatctaccgcagagtagcctttaacccaaagttcttttaaatattgcagcgattca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3042 actatatctaccgcagagtagcctttaacccaaagttcttttaaatattgcagcgattca 2983
Query: 390 tcgagagatccagataatagcattctcttgactattagtggatgcggggaatcaacaatt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2982 tcgagagatccagataatagcattctcttgactattagtggatgcggggaatcaacaatt 2923
Query: 450 tggaaaacgttctccccatttactaaaccgaaaccagcaactgtactttgtaaattgttt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2922 tggaaaacgttctccccatttactaaaccgaaaccagcaactgtactttgtaaattgttt 2863
Query: 510 attgcctgtctcatgtcaccttcggcagtgaagataatagcttcgagaccatcattcgtg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 attgcctgtctcatgtcaccttcggcagtgaagataatagcttcgagaccatcattcgtg 2803
Query: 570 tattgaacatcttccagctttataatttccaataatcttttgagaacctgttcatcagtt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 tattgaacatcttccagctttataatttccaataatcttttgagaacctgttcatcagtt 2743
Query: 630 agtttcgagtaacgtagtattgcacaacgagattgttaaggtttcaattatcttattaga 689
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 2742 agtttcgagtaacgtagtattgcacaacgagattgtaaagg-ttcaattatcttattag- 2685
Query: 690 attggttacatgcaaaagcaaatctggtcgtattagaggtataacttcattgtttcttct 749
||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 2684 attggttacatgcaaaagcaaatctcgtcgtattaga-gtataactccattg-ttcttct 2627
Query: 750 caaagcctgctgaacaccactgttcattgaatcttgctcattcaaaa 796
||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 2626 caaagcctgctgagcaccactggtcattgaatctgcctcatccaaaa 2580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7528
Number of Sequences: 1807
Number of extensions: 7528
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)