BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD09RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1615 1431 0.0
>3x_Contig1615
Length = 14844
Score = 1431 bits (722), Expect = 0.0
Identities = 796/813 (97%), Gaps = 7/813 (0%)
Strand = Plus / Minus
Query: 48 tgaacaaattcgacagattgtttggtttttagaagctgcatcgatacttgctcctaaagg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8049 tgaacaaattcgacagattgtttggtttttagaagctgcatcgatacttgctcctaaagg 7990
Query: 108 tacggaatgctggacactaatcatcgatcttaaaaatcatcatatagacaacggtggaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7989 tacggaatgctggacactaatcatcgatcttaaaaatcatcatatagacaacggtggaac 7930
Query: 168 ccgttccctatacgaatacccaccactctctcttgcgaagcaagtgatcaatatatttca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7929 ccgttccctatacgaatacccaccactctctcttgcgaagcaagtgatcaatatatttca 7870
Query: 228 agatcattatccagaaagactatacaaatgtttaatctgcaatgtcccaaattctgcgtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7869 agatcattatccagaaagactatacaaatgtttaatctgcaatgtcccaaattctgcgtg 7810
Query: 288 gacattcttgaaattagtgtacccactaatagaacccgaaccaagaaagaaaatccttta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7809 gacattcttgaaattagtgtacccactaatagaacccgaaccaagaaagaaaatccttta 7750
Query: 348 taatgacccccttgaaatccatatagaatcagatcaattgggtgctgaatacggtggtag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7749 taatgacccccttgaaatccatatagaatcagatcaattgggtgctgaatacggtggtag 7690
Query: 408 attggatttcaattacgataactcgatttactggccggatttaatacagaccgttgaatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7689 attggatttcaattacgataactcgatttactggccggatttaatacagaccgttgaatc 7630
Query: 468 aagaaagaaagtacaatacgaaaagtttgaagccttgggtgcaaacgttgggataagaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7629 aagaaagaaagtacaatacgaaaagtttgaagccttgggtgcaaacgttgggataagaga 7570
Query: 528 atttgaaataaagagaaatacttaacaatgtaacgcgtacttaccatctacatacttatc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7569 atttgaaataaagagaaatacttaacaatgtaacgcgtacttaccatctacatacttatc 7510
Query: 588 aacttattgtttacctacttcatttttttccttaatcttgatcgctacgtaccatgatat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7509 aacttattgtttacctacttcatttttttccttaatcttgatcgctacgtaccatgatat 7450
Query: 648 atttgttgataccgccgttcttgat-aaacatgcgccgatgactatcgaaaagaaaaaaa 706
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7449 atttgttgataccgccgttcttgataaaacatgcgccgatgactatcgaaaagaaaaaaa 7390
Query: 707 aaaaaaaggtccaaggttaaattgatatgaggtgagggcatctgtggggacctttaagtt 766
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 7389 aaaaaaaggtccaaggttaaattgatatgaggtgagggcatctgt-gggaactttaagtt 7331
Query: 767 tggtatattaataatgcaccccgattttggggaacaatactgttttcccttatttatgaa 826
||||||| |||||||||||| |||| ||| || ||||||||| ||| |||||||| |
Sbjct: 7330 gggtatataaataatgcacccgtattt--ggggacgatactgtttaccc-tatttatg-a 7275
Query: 827 catggtggaaggcttcataaatgggtaatacta 859
||| ||||| |||||||||||| ||||||||||
Sbjct: 7274 cattgtggatggcttcataaat-ggtaatacta 7243
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,292
Number of Sequences: 1807
Number of extensions: 16292
Number of successful extensions: 1661
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)