BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD10FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1324 0.0
>3x_Contig1442
Length = 8270
Score = 1324 bits (668), Expect = 0.0
Identities = 755/778 (97%), Gaps = 6/778 (0%)
Strand = Plus / Minus
Query: 86 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7970 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 7911
Query: 146 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7910 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 7851
Query: 206 accggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagcacaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7850 accggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagcacaa 7791
Query: 266 gagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaaccatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7790 gagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaaccatg 7731
Query: 326 gctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacattgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 gctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacattgtc 7671
Query: 386 ggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaattct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 ggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaattct 7611
Query: 446 caaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgaggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7610 caaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgaggaa 7551
Query: 506 gagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaatgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 gagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaatgg 7491
Query: 566 actccaaagggtcaattaaagattattgaccgttaaaagaacttgttgaagactcagaat 625
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 7490 actccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactcagaat 7431
Query: 626 ggtgaatacatcgcattagagaagttataattcgtttacagatcttgtccatttgttcaa 685
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 7430 ggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgttcaa 7371
Query: 686 aacatttgtgtttacgctgatc-aacaaaagttaaacccggtcggtat-attgttccaaa 743
||||| |||||||||||||||| |||||| ||||||||| |||||||| |||||||||||
Sbjct: 7370 aacatctgtgtttacgctgatcaaacaaaggttaaaccc-gtcggtatcattgttccaaa 7312
Query: 744 tgaggctgccattaccganaaggctttcaagatggatcttcttgaaaaagggcaaagatg 803
|||||||||||| ||||| |||||| ||||||||||||| | ||||||||||| ||||||
Sbjct: 7311 tgaggctgccatcaccgagaaggctatcaagatggatctac-tgaaaaagggcgaagatg 7253
Query: 804 gtttccccatttgtcccacaatgacccttttaagcccgaaatccttcaagaaatgtgg 861
|| ||||||||| |||||||||| |||| |||| ||||||||| ||||||||||||
Sbjct: 7252 --ttacccatttgtaccacaatgacactttgaagcacgaaatcctccaagaaatgtgg 7197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6270
Number of Sequences: 1807
Number of extensions: 6270
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)