BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZD10RM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1227                                                        1289   0.0  

>3x_Contig1227 
          Length = 6330

 Score = 1289 bits (650), Expect = 0.0
 Identities = 730/750 (97%), Gaps = 5/750 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   tttcttccattcaactaatctagcaaaatcttggttttctt-attacctgaatgggatac 106
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3374 tttcttccattcaactaatctagcaaaatcttggttttcttcattacctgaatgggatac 3315

                                                                        
Query: 107  gtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgataag 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 gtcccaggatcctacagtcattaatccattcaaactaacatgcttggcctccttgataag 3255

                                                                        
Query: 167  atattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctctcc 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 atattcaacaatcgaatacacctctacttctgcgaacaatccggatttttgttcctctcc 3195

                                                                        
Query: 227  agaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccctct 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 agaagtgttgatctgaacattacacgtgatcacgggtgcatccgggttccacttccctct 3135

                                                                        
Query: 287  ggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaaggtt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ggcttcttccaacttcttcgccttctttaacgaatcaacggtctctaccgagtaaaggtt 3075

                                                                        
Query: 347  cgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgccattt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 cgcaatcttagccaaatccttgcatttgttactttgcaaaccgccgatgaaatgccattt 3015

                                                                        
Query: 407  aatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttccccaaa 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 aatatcctggggtaaaatctcactcttcgtaatcatctcttgaacgtagttttccccaaa 2955

                                                                        
Query: 467  gtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttggaaac 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 gtgtctcacaccataatcatacaaaattttgatgtctgcagcaggcttatacttggaaac 2895

                                                                        
Query: 527  agctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatcttt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 agctagtaattcaacgttaacattaccgacttcctgagcagtggcattgatcttatcttt 2835

                                                                        
Query: 587  catcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatcact 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 catcgtctgataagccccaatcagctcttctttcctcacagcatcgtaactgatatcact 2775

                                                                        
Query: 647  agacattcttcttgctactatcagtcccctgcggatcattc-aaagcactattatattgg 705
            ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||
Sbjct: 2774 agacattcttcttgctactatcagtcccctgcgaatcattcaaaagcactataatatggg 2715

                                                                        
Query: 706  gtaaaccaaattttaaaagtagtgctcatcactttattcttatcagatggtgtgaattct 765
              |||||||| ||||||   |||||||||||| ||| |||||||||||| |||||| || 
Sbjct: 2714 taaaaccaaaatttaaagtaagtgctcatcac-ttaatcttatcagatgttgtgaa-tca 2657

                                          
Query: 766  ttgagcaaatttcttttatattttgaagcc 795
            | ||||||| ||| ||||||| ||||||||
Sbjct: 2656 tcgagcaaa-ttcctttatatcttgaagcc 2628


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6742
Number of Sequences: 1807
Number of extensions: 6742
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)