BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZD11RM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1541                                                        1110   0.0  

>3x_Contig1541 
          Length = 10565

 Score = 1110 bits (560), Expect = 0.0
 Identities = 594/600 (99%), Gaps = 4/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 320 cagtctcagtccaatccagtccaagccaaccaatgttccagcgtagaactcgtttactat 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagtctcagtccaatccagtccaagccaaccaatgttccagcgtagaactcgtttactat 60

                                                                       
Query: 380 aagttgtctgagtgctctctagtagcagtagcagcagcaaaaatgaaaacaagaaaagcc 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagttgtctgagtgctctctagtagcagtagcagcagcaaaaatgaaaacaagaaaagcc 120

                                                                       
Query: 440 ttctgttaggccaaattaaccactaatatttctgattatggaaatcaagttaatacgacg 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctgttaggccaaattaaccactaatatttctgattatggaaatcaagttaatacgacg 180

                                                                       
Query: 500 gacgacataattattgggtaatgttccttatgttcggtgagtgaaaaaaaaaaaaaagaa 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacgacataattattgggtaatgttccttatgttcggtgagtgaaaaaaaaaaaaaagaa 240

                                                                       
Query: 560 gtgtcgaaggaaactttaatggacgggatgggatattcagtggttgagagtgtacgtttg 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgtcgaaggaaactttaatggacgggatgggatattcagtggttgagagtgtacgtttg 300

                                                                       
Query: 620 taccatttctttcgaggtataaaaggcccagggggaaatcaatatcttgccagtcttttt 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taccatttctttcgaggtataaaaggcccagggggaaatcaatatcttgccagtcttttt 360

                                                                       
Query: 680 tgtttgttccttcgatgcgtttgttaccatctttagtcttcttactcattttattatcaa 739
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 tgtttgttccttcgatgcgtttgttaccatc-ttagtcttcttactcattttattatcaa 419

                                                                       
Query: 740 aagctcaagctattcgattctcaggtgtctcagaaattgattttttttctttgtgagcgt 799
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagctcaagctattcgattctcaggtgtctcagaaattgattttttttctttgtgagcgt 479

                                                                       
Query: 800 gcttagctaataatcccat-aaaggaccatattatcaag-atggctacgattcttcacaa 857
           ||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||
Sbjct: 480 gcttagctaataatcccataaaagaaccatattatcaagaatggctacgattctccacaa 539

                                                                       
Query: 858 acagatttggaaca-caagttcaagcagctgatgacagctctaaaactcaacaagagact 916
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acagatttggaacagcaagttcaagcagctgatgacagctctaaaactcaacaagagact 599


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,139
Number of Sequences: 1807
Number of extensions: 17139
Number of successful extensions: 397
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)