BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD12FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1320 0.0
>3x_Contig1743
Length = 20172
Score = 1320 bits (666), Expect = 0.0
Identities = 704/714 (98%), Gaps = 2/714 (0%)
Strand = Plus / Plus
Query: 88 ccttacgacgtttaaagatttcagatagttgatcatcaagttgcatcatcgcttcgtcat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14928 ccttacgacgtttaaagatttcagatagttgatcatcaagttgcatcatcgcttcgtcat 14987
Query: 148 ccatggactcgtcttcaccactgaaatcgtcatcttcatcactatcttcatcactatcct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14988 ccatggactcgtcttcaccactgaaatcgtcatcttcatcactatcttcatcactatcct 15047
Query: 208 cttcttcgttgtttcccagttgaacatcgccatgttcaccgacaatggagtcaggtaggt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048 cttcttcgttgtttcccagttgaacatcgccatgttcaccgacaatggagtcaggtaggt 15107
Query: 268 tcaaagcttttgccaaagcacttgttgcctctttttctattttttccaaagcggcatcct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15108 tcaaagcttttgccaaagcacttgttgcctctttttctattttttccaaagcggcatcct 15167
Query: 328 tgtcttcttcagaaacatcgtcctcagaatcttcagcactaggttcatcatcgtcatcat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15168 tgtcttcttcagaaacatcgtcctcagaatcttcagcactaggttcatcatcgtcatcat 15227
Query: 388 tgtcttcatcatcttcatcatcatcatcatctgttcctcgttcaacagcatcctcgtcgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15228 tgtcttcatcatcttcatcatcatcatcatctgttcctcgttcaacagcatcctcgtcgt 15287
Query: 448 cctcttcttcatcaccttcaaaaagatcagcaaaaccttgtttattctctctggcagtca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15288 cctcttcttcatcaccttcaaaaagatcagcaaaaccttgtttattctctctggcagtca 15347
Query: 508 atgtttgtaatagtacattgagttcaggttcgccgatatcatgcacgaaagattcccaca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15348 atgtttgtaatagtacattgagttcaggttcgccgatatcatgcacgaaagattcccaca 15407
Query: 568 ctataagacttaatttttt-aacaaagattttctttgagcaactaatgatagtagaatct 626
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15408 ctataagacttaattttttcaacaaagattttctttgagcaactaatgatagtagaatct 15467
Query: 627 ccgtgataccaaccaagtcagtggattctttatcacattcttcatagaatgatattagat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15468 ccgtgataccaaccaagtcagtggattctttatcacattcttcatagaatgatattagat 15527
Query: 687 cttgtaaaatggacacagattcttcattcccagcatatagttgcaggatgcccacagatt 746
||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 15528 cttgtaaaatggacacagattcttcatccccagcatatagttgcaagatggccacagata 15587
Query: 747 agaggagctcaagaccatttagcttaggaattggggtaattcttgttatctgaa 800
||||||||||||||||||||||||||| ||| | || ||||||||||||||||
Sbjct: 15588 ggaggagctcaagaccatttagcttagg-atttgtgttattcttgttatctgaa 15640
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9754
Number of Sequences: 1807
Number of extensions: 9754
Number of successful extensions: 459
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)