BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZD12RM1.SCF screened BAC_end
         (913 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1805                                                        1518   0.0  

>3x_Contig1805 
          Length = 19369

 Score = 1518 bits (766), Expect = 0.0
 Identities = 854/873 (97%), Gaps = 8/873 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 3252

                                                                        
Query: 108  catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 3192

                                                                        
Query: 168  tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 3132

                                                                        
Query: 228  tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3131 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 3072

                                                                        
Query: 288  actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 3012

                                                                        
Query: 348  cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 2952

                                                                        
Query: 408  aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 2892

                                                                        
Query: 468  ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 2832

                                                                        
Query: 528  cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 2772

                                                                        
Query: 588  tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacaganaa 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2771 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacagaaaa 2712

                                                                        
Query: 648  aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtaccctg 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2711 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagta-cctg 2653

                                                                        
Query: 708  aaaattc-agaaaagtagttacaacctcatcattccttattccattcggcatcataccat 766
            ||||| | ||||||||||| ||||||||||||||||||||||||||||  ||||||||||
Sbjct: 2652 aaaatccaagaaaagtagtaacaacctcatcattccttattccattcgcaatcataccat 2593

                                                                        
Query: 767  tttgatttttcagaat-aaaaatacaaaatggacatgacggcccaagacg-aaaactggt 824
            |||||||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2592 tttgattttcaagaataaaaaatacaaaatggacatgacggcccaagacgaaaaactggt 2533

                                                                        
Query: 825  tcacgaggaacaagtttaacaatgttc-atagcacttatttccttttcttg-tagtacca 882
             |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 2532 ccacgaggaacaagtataacaatgttcaatagcacttatttccttttcctgctagtacca 2473

                                             
Query: 883  agttcttac-tgaagaccac-gaacaatgcttt 913
            |||||| || |||||||||| ||||||||||||
Sbjct: 2472 agttctcacatgaagaccacagaacaatgcttt 2440


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6047
Number of Sequences: 1807
Number of extensions: 6047
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)