BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE01FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1033 0.0
>3x_Contig1801
Length = 57606
Score = 1033 bits (521), Expect = 0.0
Identities = 583/601 (97%), Gaps = 2/601 (0%)
Strand = Plus / Plus
Query: 82 aagaatgctgtgatctgttaaccaattcgtgttgttttctctcggctgctaataatgtat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33242 aagaatgctgtgatctgttaaccaattcgtgttgttttctctcggctgctaataatgtat 33301
Query: 142 tattccacatggagtatttttttgactacctctatatactctctctgtctcttagtaatt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33302 tattccacatggagtatttttttgactacctctatatactctctctgtctcttagtaatt 33361
Query: 202 acgtataaatactgtttttatctaataagttctatcaaggacatctcgaatctcactccc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33362 acgtataaatactgtttttatctaataagttctatcaaggacatctcgaatctcactccc 33421
Query: 262 agcctttacttctactagtatgcctttttttttcccccattgtgtcacaggacatgttct 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33422 agcctttacttctactagtatgcctttttttttcccccattgtgtcacaggacatgttct 33481
Query: 322 gatgaatagcatttcttatttatcatattgtcaagatttctaatgttaaatcatcatctc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33482 gatgaatagcatttcttatttatcatattgtcaagatttctaatgttaaatcatcatctc 33541
Query: 382 atctcatcaacaaggtattaaaaagataaaaaagggtatcgaacacaaggatcaaccaat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33542 atctcatcaacaaggtattaaaaagataaaaaagggtatcgaacacaaggatcaaccaat 33601
Query: 442 gtctttaccacacgctacatataccggacccaaatcaactcatgaattcgaagtcgatcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33602 gtctttaccacacgctacatataccggacccaaatcaactcatgaattcgaagtcgatcc 33661
Query: 502 ttctgaccccaggtaccagactaccgaggggagaactactggtgcttcagattatgtatt 561
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 33662 ttctgaccccaggtaccagactacggagggaagaactactggtgcttcagattatgtatt 33721
Query: 562 gaaacaagggcattaagaacttgat-aacctagggacccaaaggaagttgattacgtcaa 620
||||||||||||| |||| | ||| ||||||| ||||||||| | |||||| |||||||
Sbjct: 33722 gaaacaagggcatcaagacgtcgataaacctagtgacccaaagaaggttgataacgtcaa 33781
Query: 621 ttagtaaaacaggaatcgatcaattttccccgctttcgcaattggggatgcaattgaccg 680
|||||| |||||||||||||||| | || ||||||||||| || |||||||||||||||
Sbjct: 33782 -tagtaagacaggaatcgatcaatataccacgctttcgcaactgcggatgcaattgaccg 33840
Query: 681 g 681
|
Sbjct: 33841 g 33841
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8144
Number of Sequences: 1807
Number of extensions: 8144
Number of successful extensions: 278
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)