BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE01RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 680 0.0
3x_Contig849 410 e-114
>3x_Contig1512
Length = 8803
Score = 680 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Minus
Query: 47 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 288
Query: 107 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 228
Query: 167 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 168
Query: 227 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 108
Query: 287 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 48
Query: 347 ttagagactgtgacaaagccatcgagaaggatccaaactttgtcaga 393
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47 ttagagactgtgacaaagccatcgagaaagatccaaactttgtcaga 1
>3x_Contig849
Length = 3479
Score = 410 bits (207), Expect = e-114
Identities = 260/274 (94%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 611 cagaagttgcatcaattttacaagaccctgtca-tgcaatctatactctcacaagctcag 669
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3479 cagaagttgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcag 3420
Query: 670 caaaatcctgctgctttacaggaacacatgagaaacccagacgtcttcaagaagattcaa 729
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3419 caaaatcctgctgctttaaaggaacacatgagaaacccagacgtcttcaagaaaattcaa 3360
Query: 730 accttgatcgccgctggtataatcaagactcgctagttctacagacagtcagtcatatta 789
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 accttaatcgccgctggtataatcaagactcgctagttctacagacagtcagtcatatta 3300
Query: 790 ctcgacctgaaactncaacatgaattagtatatatacacggcctatgtttagcattttaa 849
|||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 3299 ctcgccctgaaacttcaacatgaattagtatatatacac-gcctatgtttagca-tttaa 3242
Query: 850 ttttctttcaagaatatatctataccattattct 883
|| |||| || |||||||||||||||||||||
Sbjct: 3241 ttctcttccagatatatatctataccattattct 3208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6114
Number of Sequences: 1807
Number of extensions: 6114
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)