BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 1308 0.0
>3x_Contig1414
Length = 7923
Score = 1308 bits (660), Expect = 0.0
Identities = 697/707 (98%), Gaps = 2/707 (0%)
Strand = Plus / Minus
Query: 209 tgaggtctattgtagatgcagcgacagaatttgcaagtttagtggatccgattttaacag 268
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 tgaggtctattggagatgcagcgacagaatttgcaagtttagtggatccgattttaacag 7836
Query: 269 aatcagattcggactcagctaattcgaatcattctgagaataacagcgcgccttctgaac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7835 aatcagattcggactcagctaattcgaatcattctgagaataacagcgcgccttctgaac 7776
Query: 329 ctgaacacaatcaggaccatgaagaaaacaaatctgaaaatcactctggggaagagtctt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7775 ctgaacacaatcaggaccatgaagaaaacaaatctgaaaatcactctggggaagagtctt 7716
Query: 389 atgtttcggaggaagttcactcagttaaagaatcaaatgaattgcatgatgccgaagcac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7715 atgtttcggaggaagttcactcagttaaagaatcaaatgaattgcatgatgccgaagcac 7656
Query: 449 tacaaacactagaaatgattaataaaacaacggacaaaattaaacattatggaggcatgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7655 tacaaacactagaaatgattaataaaacaacggacaaaattaaacattatggaggcatgg 7596
Query: 509 atctacccaaggacactccggatgaagacgttgatacaactccgacctcagttatcatcg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7595 atctacccaaggacactccggatgaagacgttgatacaactccgacctcagttatcatcg 7536
Query: 569 atgataccactgaacttcacttggctccaagcgacgcaaatcctattacgtctcctggtc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7535 atgataccactgaacttcacttggctccaagcgacgcaaatcctattacgtctcctggtc 7476
Query: 629 aaaaactagaaacatctacccgagcaggctcgattccaattgaaatcgaaaatgaagagt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7475 aaaaactagaaacatctacccgagcaggctcgattccaattgaaatcgaaaatgaagagt 7416
Query: 689 cagacgcagctgatattccagtcactattgaaaaagcagaaacacctcagcagagaacac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7415 cagacgcagctgatattccagtcactattgaaaaagcagaaacacctcagcagagaacac 7356
Query: 749 cggtgaaaaaaagaccacgcgccacagagaacagcagtccaaaaccttcaaagcgtgaaa 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7355 cggtgaaaaaaagaccacgcgccacagagaacagcagtccaaaaccttcaaagcgtaaaa 7296
Query: 809 gaagcaagaaaagaanaacagcttcgc-aaatcacttcagttgctcgaaacttgagatct 867
||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 7295 gaagcaagaaaagaaaacaagc-tcgcaaaatcacttcagttgctcgaaacttgagatct 7237
Query: 868 aaatcgaaaaagcgatgattgtgaacatattactataaccatcacgc 914
|||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 7236 aaatcgaaaaagcgatgattgtgacaatataactataaccatcacgc 7190
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6343
Number of Sequences: 1807
Number of extensions: 6343
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)