BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE02RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1677 0.0
>3x_Contig1759
Length = 25622
Score = 1677 bits (846), Expect = 0.0
Identities = 856/860 (99%)
Strand = Plus / Minus
Query: 49 ggcaagacaattatacgtcattatactgattggacatacctctctcgtcgattggcctga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 ggcaagacaattatacgtcattatactgattggacatacctctctcgtcgattggcctga 7891
Query: 109 tgaatctcgaggaacagctaacatcggccttttgataaatctaaggtctgcgggcaattt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 tgaatctcgaggaacagctaacatcggccttttgataaatctaaggtctgcgggcaattt 7831
Query: 169 tggatctataccttgagcaataagagcctctttttttgctattttcgcagcttctctctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7830 tggatctataccttgagcaataagagcctctttttttgctattttcgcagcttctctctt 7771
Query: 229 agctcgcatctcagcgatatactctggagtgatctcattcaaggccttgccttttttctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7770 agctcgcatctcagcgatatactctggagtgatctcattcaaggccttgccttttttctt 7711
Query: 289 acttttcttgtcctttactttattcttaccttctaccttcaactggtccatcccatcagt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7710 acttttcttgtcctttactttattcttaccttctaccttcaactggtccatcccatcagt 7651
Query: 349 aatcgatagcttttttgcttgttccacaagctcttttggaacgtctttgacgccggtgtc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7650 aatcgatagcttttttgcttgttccacaagctcttttggaacgtctttgacgccggtgtc 7591
Query: 409 ttgcgtactaccagccatattggctcaaattattacttctactttgcagtgtatagtggc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7590 ttgcgtactaccagccatattggctcaaattattacttctactttgcagtgtatagtggc 7531
Query: 469 gatataaaccttagagagatctaaccaaccatggcgttaagagcttgttaatatgatata 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7530 gatataaaccttagagagatctaaccaaccatggcgttaagagcttgttaatatgatata 7471
Query: 529 tatatatattattcaatcgggcataaatattggaaaaaaagaaatgacatatatatatat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7470 tatatatattattcaatcgggcataaatattggaaaaaaagaaatgacatatatatatat 7411
Query: 589 atatatatacataaccaagcaaatgcccctcctaagacaatttcaatgcaacttcatatt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7410 atatatatacataaccaagcaaatgcccctcctaagacaatttcaatgcaacttcatatt 7351
Query: 649 caggaagaaatattcaaacagcgagatataatcttgagatctttatatgcaattcctggt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7350 caggaagaaatattcaaacagcgagatataatcttgagatctttatatgcaattcctggt 7291
Query: 709 tctttctcagtaggtagcactttcctgcgacggtttgtgagaagtgcccaaatgacatac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7290 tctttctcagtaggtagcactttcctgcgacggtttgtgagaagtgcccaaatgacatac 7231
Query: 769 gcgatgagctgctagaccatatacatcacatgatatcactttatacgttttgatgctatt 828
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7230 gcgatgagctgctagacaatatacatcacatgatatcactttatacgttttgatgctatt 7171
Query: 829 tgaaaaaacaatgtacgttggctattaatggnttgaatacccagntaatctcttcgataa 888
||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 7170 tgaaaaatcaatgtacgttggctattaatggtttgaatacccagttaatctcttcgataa 7111
Query: 889 tgatgcacaagatctcttaa 908
||||||||||||||||||||
Sbjct: 7110 tgatgcacaagatctcttaa 7091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,310
Number of Sequences: 1807
Number of extensions: 16310
Number of successful extensions: 2470
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)