BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZE03RM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig948                                                         1513   0.0  

>3x_Contig948 
          Length = 3578

 Score = 1513 bits (763), Expect = 0.0
 Identities = 864/890 (97%), Gaps = 6/890 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   atagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcggtaca 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 atagaaacttcctcctgaattttgactctgaagtcaccagaaccatttaaattcggtaca 1012

                                                                        
Query: 108  aggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtttcttc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aggtttggtccgcataatttcgtctcgacgtgtttcttgggtcttcccctcggtttcttc 952

                                                                        
Query: 168  accaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatttacta 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  accaaatttaccttatgttgtttgatatcacatttattattcgaatgtatcaatttacta 892

                                                                        
Query: 228  tactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtcttagac 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  tactgtcgcaaatccataccaacagaggtgttagggttgagattagcacctgtcttagac 832

                                                                        
Query: 288  attatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataagatgc 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  attatcaatgtcagtataaccttaaaagtacccctgtttttttacgtcgaaataagatgc 772

                                                                        
Query: 348  tgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaataatgt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  tgaatagcaacaaaggaccctggaaaaatatcaatcaattaaattcaagattaataatgt 712

                                                                        
Query: 408  atttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctctattctt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  atttcaccttggatttcagatcaaagacgttaccagttgctgttaacgcgctctattctt 652

                                                                        
Query: 468  gaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgtttttaagtaa 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  gaatattttgtatctaatcatcgtgtttttttaagatgaatcattttcgtttttaagtaa 592

                                                                        
Query: 528  gtgtgaaagatatatgtccgtcagcaaaaaggcctaattgagtaattacaaggacaccaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  gtgtgaaagatatatgtccgtcagcaaaaaggcctaattgagtaattacaaggacaccaa 532

                                                                        
Query: 588  gtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgntaaagt 647
            |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |
Sbjct: 531  gtgagatataacaaagagatttgggtagatgagggatgagggatttgacggtgtaaagtt 472

                                                                        
Query: 648  gaatgtatggatgtattttgggcttgatatttcaatactttaccttttgcgtgaaattct 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  gaatgtatggatgtattttgggcttgatatttcaatactttaccttttgcgtgaaattct 412

                                                                        
Query: 708  actgtggagtgaggtgacattgcacttttgccgaagcgtaatacacaatcacctggcttt 767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  actgtggagtgaggtgacattgcacttttgccgaagcgtaatacacaatcacctggcttt 352

                                                                        
Query: 768  catagactgacgtgtgtacaattatttattgactac-taaaccat-aaggatgtgatgca 825
            ||||||||||||||||||| |||||| ||||||||| ||||| || ||||||||||||||
Sbjct: 351  catagactgacgtgtgtaccattattaattgactacttaaacaataaaggatgtgatgca 292

                                                                        
Query: 826  aaaaagtcgacctggataattttt-atccaagcctatttttgaaaccttcg-aagaaaac 883
            || | ||||| ||||||||||||| |||||||| ||| | ||||| || || |||||| |
Sbjct: 291  aagaggtcgagctggataatttttaatccaagcatatatatgaaaactccgaaagaaacc 232

                                                              
Query: 884  tgcccaat-aaatgtcgacccgttccatagtataat-ggcgttaaacctg 931
            |||||||| |||||||||| ||| | |||||||||| ||||| |||||||
Sbjct: 231  tgcccaataaaatgtcgacgcgtacaatagtataataggcgtaaaacctg 182


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6497
Number of Sequences: 1807
Number of extensions: 6497
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)