BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1120 383 e-106
>3x_Contig1120
Length = 3902
Score = 383 bits (193), Expect = e-106
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 86 tgccacaagaattggtcggtgcttacttatacttggcttccgatgctgcttcttacacca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgccacaagaattggtcggtgcttacttatacttggcttccgatgctgcttcttacacca 449
Query: 146 acggttgtgatatccaagttgacggtggttatacctgtgtttgaatcctgttgtagaaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acggttgtgatatccaagttgacggtggttatacctgtgtttgaatcctgttgtagaaaa 389
Query: 206 agcttcgtcaacacctattactgataattgtcactgccttttcccctacatcatgctcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agcttcgtcaacacctattactgataattgtcactgccttttcccctacatcatgctcaa 329
Query: 266 aatatttctgttt 278
|||||||||||||
Sbjct: 328 aatatttctgttt 316
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,131
Number of Sequences: 1807
Number of extensions: 13131
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)