BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZE04RM1.SCF screened BAC_end (905 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1331 1273 0.0 >3x_Contig1331 Length = 5830 Score = 1273 bits (642), Expect = 0.0 Identities = 712/726 (98%), Gaps = 7/726 (0%) Strand = Plus / Plus Query: 54 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1887 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 1946 Query: 114 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1947 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 2006 Query: 174 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2007 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 2066 Query: 234 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2067 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 2126 Query: 294 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2127 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 2186 Query: 354 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2187 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 2246 Query: 414 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2247 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 2306 Query: 474 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2307 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 2366 Query: 534 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2367 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 2426 Query: 594 tc-aaaccaaaa-taatttgtcgaattc-aaatctatctattttgtgcataaacctagct 650 || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2427 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 2486 Query: 651 tatgccatctactactttagtctaaggtaagtttacatatttgtttacaactttctgaaa 710 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2487 tatgccatctactac-ttagtctaaggtaagtttacatatttgtttacaac-ttctgaaa 2544 Query: 711 ccttagagagatagttcttgtttctttttaagatcacacc-tgagcccttcatactttgt 769 ||| |||||| ||||||||||||| | ||| ||||||||| |||||| | ||||||||| Sbjct: 2545 cctcagagag-tagttcttgtttcctcttaggatcacaccatgagccttcaatactttgt 2603 Query: 770 ctggcg 775 |||||| Sbjct: 2604 ctggcg 2609 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7096 Number of Sequences: 1807 Number of extensions: 7096 Number of successful extensions: 42 Number of sequences better than 1.0e-20: 1 length of query: 905 length of database: 10,358,551 effective HSP length: 16 effective length of query: 889 effective length of database: 10,329,639 effective search space: 9183049071 effective search space used: 9183049071 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)