BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZE04RM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1331                                                        1273   0.0  

>3x_Contig1331 
          Length = 5830

 Score = 1273 bits (642), Expect = 0.0
 Identities = 712/726 (98%), Gaps = 7/726 (0%)
 Strand = Plus / Plus

                                                                        
Query: 54   tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 1946

                                                                        
Query: 114  atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 2006

                                                                        
Query: 174  gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 2066

                                                                        
Query: 234  ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 2126

                                                                        
Query: 294  tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 2186

                                                                        
Query: 354  ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 2246

                                                                        
Query: 414  acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 2306

                                                                        
Query: 474  tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 2366

                                                                        
Query: 534  tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 2426

                                                                        
Query: 594  tc-aaaccaaaa-taatttgtcgaattc-aaatctatctattttgtgcataaacctagct 650
            || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2427 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 2486

                                                                        
Query: 651  tatgccatctactactttagtctaaggtaagtttacatatttgtttacaactttctgaaa 710
            ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2487 tatgccatctactac-ttagtctaaggtaagtttacatatttgtttacaac-ttctgaaa 2544

                                                                        
Query: 711  ccttagagagatagttcttgtttctttttaagatcacacc-tgagcccttcatactttgt 769
            ||| |||||| ||||||||||||| | ||| ||||||||| |||||| |  |||||||||
Sbjct: 2545 cctcagagag-tagttcttgtttcctcttaggatcacaccatgagccttcaatactttgt 2603

                  
Query: 770  ctggcg 775
            ||||||
Sbjct: 2604 ctggcg 2609


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7096
Number of Sequences: 1807
Number of extensions: 7096
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)