BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE06FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1393 1074 0.0
>3x_Contig1393
Length = 6980
Score = 1074 bits (542), Expect = 0.0
Identities = 608/625 (97%), Gaps = 4/625 (0%)
Strand = Plus / Plus
Query: 91 attgttgttgaagttgttggctgttgtggtttgttttcttcattgcggattttataggtg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6344 attgttgttgaagttgttggctgttgtggtttgttttcttcattgcggattttataggtg 6403
Query: 151 aaggagtcttttctaatggaatcttaggggtaacaagagcatcctcctcattaactctct 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6404 aaggagtcttttctaatggaatcttaggggtaacaagagcatcctcctcattaactctct 6463
Query: 211 ggagttctggattagcggacctgatatactgagcgagggtgcttttgcctgtctccggtt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6464 ggagttctggattagcggacctgatatactgagcgagggtgcttttgcctgtctccggtt 6523
Query: 271 gggactccggttgggactccggttgagattctgattgacgttcagcaacgataggatctt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6524 gggactccggttgggactccggttgagattctgattgacgttcagcaacgataggatctt 6583
Query: 331 gaacttcaatttgatgttcctcttcatcaaccactttttcaactatagtttcctggacac 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6584 gaacttcaatttgatgttcctcttcatcaaccactttttcaactatagtttcctggacac 6643
Query: 391 catcgttgccaggaagagccttttcttttgaatccggaatatctactttagatgtgttat 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6644 catcgttgccaggaagagccttttcttttgaatccggaatatctactttagatgtgttat 6703
Query: 451 gctctgcttttttgagagattccttgtcagtttccttctcggcattaatcgtttcatctt 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6704 gctctgcttttttgagagattccttgtcagtttccttctcggcattaatcgtttcatctg 6763
Query: 511 gcanagaagtaacttccttctgatgtgtaagaataacgtgttcttcttctaccacttgct 570
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6764 gcaaagaagtaacttccttctgatgtgtaagaataacgtgttcttcttctaccacttgct 6823
Query: 571 tttgatcaaggtcgatcttttgttc-acagcttctttggttacgcttagatcagaatgaa 629
|| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct: 6824 ttgaatcaaggtcgatcttttgttcaacagcttctttggtaacgcttagatcagtatgaa 6883
Query: 630 -ttttggctgttcttcttttgtcgctgagtctatc-aatcttttatgatagctctttcca 687
||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct: 6884 tttttggctgttcttcttctgtcgctgagtctatcaaatctttagtgatagctctttcag 6943
Query: 688 gagtcttgtggtaatgcagtaccgt 712
||||| |||||||| |||||||||
Sbjct: 6944 gagtc-tgtggtaagtcagtaccgt 6967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8051
Number of Sequences: 1807
Number of extensions: 8051
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)