BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE06RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig907 1241 0.0
>3x_Contig907
Length = 3418
Score = 1241 bits (626), Expect = 0.0
Identities = 712/734 (97%), Gaps = 5/734 (0%)
Strand = Plus / Minus
Query: 47 ttaccaagtgtcctaatccggttgtctaccaatgaagtaatagtcgactctgaattcgat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 ttaccaagtgtcctaatccggttgtctaccaatgaagtaatagtcgactctgaattcgat 3026
Query: 107 cccgtcttatcaaaccgacatacttattcgaaagaagcagagaagttgaaacgaaaagtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 cccgtcttatcaaaccgacatacttattcgaaagaagcagagaagttgaaacgaaaagtt 2966
Query: 167 cgtgggtctgattatgaacgtgataatgttgaaatgggcgaaaatggtaccaataacttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 cgtgggtctgattatgaacgtgataatgttgaaatgggcgaaaatggtaccaataacttc 2906
Query: 227 atagaattttggcgacagctcaatgaaagataaagcaaaagtacacttttatataatttt 286
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 2905 atagaattttggcgacagctcaatgaaagataaagcaaaagtacagtgttatataatttg 2846
Query: 287 tgttatatatgtaacaccaagtcttctatctatatattagtgggaagcagtgttaataaa 346
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2845 tgttatatatgtaacaccaagtcgtctatctatatattagtgggaagcagtgttaataaa 2786
Query: 347 tcgaatcgattaagttgaaatagtttcttttacaaaattactattcaattcatcaagacg 406
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2785 tcgaatcgattaagttgaaatagtttcttttacacaattactattcaattcatcaagacg 2726
Query: 407 tttagaactgtagccacgtatttcctcattgatctcttttgatttatgattaagttgatg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 tttagaactgtagccacgtatttcctcattgatctcttttgatttatgattaagttgatg 2666
Query: 467 ctctagaacagtactttctgcaagaatatctctttcatcattatttgacggatagttgtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2665 ctctagaacagtactttctgcaagaatatctctttcatcattatttgacggatagttgtt 2606
Query: 527 gccagctaaaagcttttgcgttctgtaattttcatatagcttattgtgcgttgtatcttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2605 gccagctaaaagcttttgcgttctgtaattttcatatagcttattgtgcgttgtatcttt 2546
Query: 587 caaatcttgaagatgagatcctaatagaatgttctttcaat-aatgaaatcac-atgagc 644
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 2545 caaatcttgaagatgagatcctaatagaatgttcttcaaataaatgaaatcacaatgagc 2486
Query: 645 cctatttt-cacttttacagttcccccagagtaccttcttacgtggaacagttctccatt 703
|||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 2485 cctattttccacttttacagttccccaggagtaccttctcacgtgaaacagttctccatt 2426
Query: 704 tggtgagactttaactttctttactaccaattatcgaaaatgggtacattatccttgatt 763
||||||||||| ||| ||| ||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 2425 tggtgagacttcaac-ttcattactaccaattatcgaaaatggtaaca-tatccctgatt 2368
Query: 764 ctacagcaagctgt 777
||||| ||||||||
Sbjct: 2367 ctacatcaagctgt 2354
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8249
Number of Sequences: 1807
Number of extensions: 8249
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)