BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE07FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1459 0.0
>3x_Contig1770
Length = 29267
Score = 1459 bits (736), Expect = 0.0
Identities = 743/744 (99%), Gaps = 1/744 (0%)
Strand = Plus / Minus
Query: 83 atcacatcgttcgattcctattaactccagattatcatcggtgaggaattatatctcaat 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19122 atcacatcgttcgattcctattaactccagattatcatcggtgaggaattatatctcaat 19063
Query: 143 cggatgtgctaataaaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagta 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19062 cggatgtgctaataaaacgggcagcaggcttcttcgttccgcaggggtatcaagtcagta 19003
Query: 203 caaagatttcaggaggtttaacagttccagtaatggtaatggtaccgacaagaatgcttc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19002 caaagatttcaggaggtttaacagttccagtaatggtaatggtaccgacaagaatgcttc 18943
Query: 263 tgttgcaccgaaaactgaggtcaagaagattgttcccccaaaaccatcaactaatggtaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18942 tgttgcaccgaaaactgaggtcaagaagattgttcccccaaaaccatcaactaatggtaa 18883
Query: 323 atcaaagactccgaccatttcggaattgcgtattatgaaagatctatttaagtatatctg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18882 atcaaagactccgaccatttcggaattgcgtattatgaaagatctatttaagtatatctg 18823
Query: 383 gcccagcggtgataacaaggtcaaaattagagtgttaattgcattggcgctattgatagg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18822 gcccagcggtgataacaaggtcaaaattagagtgttaattgcattggcgctattgatagg 18763
Query: 443 tgccaagttgttgaatgttcaagttccttttttcttcaaacagaccatcgattcgatgaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18762 tgccaagttgttgaatgttcaagttccttttttcttcaaacagaccatcgattcgatgaa 18703
Query: 503 tattgaatggggtccagatgtggctactgtgctcccagttgcgataacaatgactattct 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18702 tattgaatggggtccagatgtggctactgtgctcccagttgcgataacaatgactattct 18643
Query: 563 ctcgtacggtgctgctagattcggtgctgttatgtttggtgagttgaggaacgcagtttt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18642 ctcgtacggtgctgctagattcggtgctgttatgtttggtgagttgaggaacgcagtttt 18583
Query: 623 cgctaaggtggcccaaaacgctatcaggaaagtctcattacaaacgttccaacatttaat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18582 cgctaaggtggcccaaaacgctatcaggaaagtctcattacaaacgttccaacatttaat 18523
Query: 683 gaagttagatctgggatggcatctaagtagacaaactggtgggttgactcgtgccatgga 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18522 gaagttagatctgggatggcatctaagtagacaaactggtgggttgactcgtgccatgga 18463
Query: 743 tagaggtaccaagggtatctcatatgttctcagtgctatggttttccatatgattccaat 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18462 tagaggtaccaagggtatctcatatgttctcagtgctatggttttccatatgattccaat 18403
Query: 803 cacgtttggaaatatccgtggttt 826
||||||| ||||||||||||||||
Sbjct: 18402 cacgttt-gaaatatccgtggttt 18380
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5268
Number of Sequences: 1807
Number of extensions: 5268
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)