BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZE07RM1.SCF screened BAC_end (895 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig220 839 0.0 3x_Contig1347 101 2e-21 >3x_Contig220 Length = 1055 Score = 839 bits (423), Expect = 0.0 Identities = 447/451 (99%), Gaps = 3/451 (0%) Strand = Plus / Minus Query: 49 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 398 Query: 109 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 397 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 338 Query: 169 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 278 Query: 229 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 218 Query: 289 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 158 Query: 349 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 98 Query: 409 tctaggaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccat 466 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 97 tctaggaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccat 38 Query: 467 tgtt-atttgattcgatcttgcccattcttc 496 |||| ||||||||| |||||||||||||||| Sbjct: 37 tgttgatttgattctatcttgcccattcttc 7 >3x_Contig1347 Length = 6130 Score = 101 bits (51), Expect = 2e-21 Identities = 71/75 (94%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 821 acgattggtttgtagatcggaaaagagct-gtgaag-caagacatactgggataaagata 878 ||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||| Sbjct: 4 acgattggtttgtagatcgaaaaagagctagagaaggcaagacatactgggataaagata 63 Query: 879 attcagcaaattgct 893 ||||||||||||||| Sbjct: 64 attcagcaaattgct 78 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6392 Number of Sequences: 1807 Number of extensions: 6392 Number of successful extensions: 39 Number of sequences better than 1.0e-20: 2 length of query: 895 length of database: 10,358,551 effective HSP length: 16 effective length of query: 879 effective length of database: 10,329,639 effective search space: 9079752681 effective search space used: 9079752681 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)