BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZE08FM1.SCF screened BAC_end (909 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig688 1287 0.0 >3x_Contig688 Length = 2555 Score = 1287 bits (649), Expect = 0.0 Identities = 739/762 (96%), Gaps = 6/762 (0%) Strand = Plus / Minus Query: 88 caatgtctctgacaacgataccggtacatttacacctttagaatcatatttactgtcaat 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 936 caatgtctctgacaacgataccggtacatttacacctttagaatcatatttactgtcaat 877 Query: 148 gttattcaattggacaaccggcctttcactatcgaaagccactactgcatcttttagcac 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 gttattcaattggacaaccggcctttcactatcgaaagccactactgcatcttttagcac 817 Query: 208 aatttcagttgcaatacagtactgaacaaacgtcaatgcactgagtattaagctttgaac 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 aatttcagttgcaatacagtactgaacaaacgtcaatgcactgagtattaagctttgaac 757 Query: 268 tctcatttcttctcttcgttatatttataccttaaacgaattcctaggaagtcaattacg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 tctcatttcttctcttcgttatatttataccttaaacgaattcctaggaagtcaattacg 697 Query: 328 caatgatcacttctaatcaatcaatggcaaaaattaataaaaccagtgctataacaaaca 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 696 caatgatcacttctaatcaatcaatggcaaaaattaataaaaccagtgctataacaaaca 637 Query: 388 aaatgggaaatatcacagatattcgaacaactgtaacaactttaactttacttaattcgg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 aaatgggaaatatcacagatattcgaacaactgtaacaactttaactttacttaattcgg 577 Query: 448 tggtgttttctcttcgtgttctattcctattctaaaattgtacgtttgttaattgtgttt 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 576 tggtgttttctcttcgtgttctattcctattctaaaattgtacgtttgttaattgtgttt 517 Query: 508 ttctcttgaatatcagatatactattttagtatgtgaattttattattagtgtagctaca 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 516 ttctcttgaatatcagatatactattttagtatgtgaattttattattagtgtagctaca 457 Query: 568 aaataaaaaaaaatgttgtggaatcagcttacccggatacgttgagaaggctgaccctgc 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 aaataaaaaaaaatgttgtggaatcagcttacccggatacgttgagaaggctgaccctgc 397 Query: 628 ctnctgatgacactgacgatgaccaattttcaagtgctattcaataagggacttctc-at 686 || ||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||| || Sbjct: 396 ctcctgatgacactgacgatgaccaa-tttcaagtgctatccaataa-ggactcctcaat 339 Query: 687 ggattggtantgggattgtagaaccctaaagtctgggaaggtgctgcttgctcctgttgn 746 ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 338 ggatt-gtaatgggattgtag-accctaaagtctgggaaggtgctgcttgctcctgttgt 281 Query: 747 ggaattaattcgtcaccctgctgttgagctttcacttttttctccttttttgcaagcttg 806 | | ||||||||||||||||||||||||||||||||||||||||| ||||||| || || Sbjct: 280 gtgaataattcgtcaccctgctgttgagctttcacttttttctcctcttttgcaggc-tg 222 Query: 807 gtttgatggccactgggccaaaatgccttttaactggccttg 848 |||||||||| ||||| | | |||||| ||||||| ||||| Sbjct: 221 gtttgatggcaactggtcgatcatgcctcttaactgtccttg 180 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7808 Number of Sequences: 1807 Number of extensions: 7808 Number of successful extensions: 62 Number of sequences better than 1.0e-20: 1 length of query: 909 length of database: 10,358,551 effective HSP length: 16 effective length of query: 893 effective length of database: 10,329,639 effective search space: 9224367627 effective search space used: 9224367627 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)