BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZE08FM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig688                                                         1287   0.0  

>3x_Contig688 
          Length = 2555

 Score = 1287 bits (649), Expect = 0.0
 Identities = 739/762 (96%), Gaps = 6/762 (0%)
 Strand = Plus / Minus

                                                                       
Query: 88  caatgtctctgacaacgataccggtacatttacacctttagaatcatatttactgtcaat 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 caatgtctctgacaacgataccggtacatttacacctttagaatcatatttactgtcaat 877

                                                                       
Query: 148 gttattcaattggacaaccggcctttcactatcgaaagccactactgcatcttttagcac 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gttattcaattggacaaccggcctttcactatcgaaagccactactgcatcttttagcac 817

                                                                       
Query: 208 aatttcagttgcaatacagtactgaacaaacgtcaatgcactgagtattaagctttgaac 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatttcagttgcaatacagtactgaacaaacgtcaatgcactgagtattaagctttgaac 757

                                                                       
Query: 268 tctcatttcttctcttcgttatatttataccttaaacgaattcctaggaagtcaattacg 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tctcatttcttctcttcgttatatttataccttaaacgaattcctaggaagtcaattacg 697

                                                                       
Query: 328 caatgatcacttctaatcaatcaatggcaaaaattaataaaaccagtgctataacaaaca 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caatgatcacttctaatcaatcaatggcaaaaattaataaaaccagtgctataacaaaca 637

                                                                       
Query: 388 aaatgggaaatatcacagatattcgaacaactgtaacaactttaactttacttaattcgg 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaatgggaaatatcacagatattcgaacaactgtaacaactttaactttacttaattcgg 577

                                                                       
Query: 448 tggtgttttctcttcgtgttctattcctattctaaaattgtacgtttgttaattgtgttt 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tggtgttttctcttcgtgttctattcctattctaaaattgtacgtttgttaattgtgttt 517

                                                                       
Query: 508 ttctcttgaatatcagatatactattttagtatgtgaattttattattagtgtagctaca 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttctcttgaatatcagatatactattttagtatgtgaattttattattagtgtagctaca 457

                                                                       
Query: 568 aaataaaaaaaaatgttgtggaatcagcttacccggatacgttgagaaggctgaccctgc 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaataaaaaaaaatgttgtggaatcagcttacccggatacgttgagaaggctgaccctgc 397

                                                                       
Query: 628 ctnctgatgacactgacgatgaccaattttcaagtgctattcaataagggacttctc-at 686
           || ||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||| ||
Sbjct: 396 ctcctgatgacactgacgatgaccaa-tttcaagtgctatccaataa-ggactcctcaat 339

                                                                       
Query: 687 ggattggtantgggattgtagaaccctaaagtctgggaaggtgctgcttgctcctgttgn 746
           ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 338 ggatt-gtaatgggattgtag-accctaaagtctgggaaggtgctgcttgctcctgttgt 281

                                                                       
Query: 747 ggaattaattcgtcaccctgctgttgagctttcacttttttctccttttttgcaagcttg 806
           |  | ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct: 280 gtgaataattcgtcaccctgctgttgagctttcacttttttctcctcttttgcaggc-tg 222

                                                     
Query: 807 gtttgatggccactgggccaaaatgccttttaactggccttg 848
           |||||||||| ||||| | |  |||||| ||||||| |||||
Sbjct: 221 gtttgatggcaactggtcgatcatgcctcttaactgtccttg 180


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7808
Number of Sequences: 1807
Number of extensions: 7808
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)