BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZE08RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1603                                                        1370   0.0  

>3x_Contig1603 
          Length = 12146

 Score = 1370 bits (691), Expect = 0.0
 Identities = 768/783 (98%), Gaps = 8/783 (1%)
 Strand = Plus / Minus

                                                                        
Query: 48   atgaaaatctaaaaagtttgtccactgacatagctaagaaagaaaaagagatagtagaat 107
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3998 atgaaaatctaaaaagtttgtccactgacatagctaagaaagacaaagagatagtagaat 3939

                                                                        
Query: 108  cacgccacgtaacagatcatttgaaaactcagcgctatgagcttgggaaaagttctcgac 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 cacgccacgtaacagatcatttgaaaactcagcgctatgagcttgggaaaagttctcgac 3879

                                                                        
Query: 168  tcttgcagcaatatgatgtcaagatcagtagatatcgccagaaagtcaacgacaacaatg 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3878 tcttgcagcaatatgatgtcaagatcagtagatatcgccagaaagtcaacgacaacaatg 3819

                                                                        
Query: 228  aaaagctaagagtagatataagagacagcataaaagaagccagtaacaagttacaagagg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 aaaagctaagagtagatataagagacagcataaaagaagccagtaacaagttacaagagg 3759

                                                                        
Query: 288  cacgcgagagcgagaggaaagctttacttcgtttacaccccataaccatacagatgcaag 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 cacgcgagagcgagaggaaagctttacttcgtttacaccccataaccatacagatgcaag 3699

                                                                        
Query: 348  aatttgatatcgagatggcgacaaagaatatgtatctcctggaattacgtacgaaaattg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 aatttgatatcgagatggcgacaaagaatatgtatctcctggaattacgtacgaaaattg 3639

                                                                        
Query: 408  attccatatcacaggtgtgcaggtctatggaagaagcgcgcaatttgaaaaaagaagagt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 attccatatcacaggtgtgcaggtctatggaagaagcgcgcaatttgaaaaaagaagagt 3579

                                                                        
Query: 468  tcatcgatgtttctgagcaatacaaaagtatcaaaaacacagatgagtttataaagtgct 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 tcatcgatgtttctgagcaatacaaaagtatcaaaaacacagatgagtttataaagtgct 3519

                                                                        
Query: 528  cgaatgcaatcgagaacttcccagaagaggaaaaggatgttctcaacgaaattgcggtaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 cgaatgcaatcgagaacttcccagaagaggaaaaggatgttctcaacgaaattgcggtaa 3459

                                                                        
Query: 588  aatataatcaagaaaatcaattcagctcgattcatatcgaaagta-tataaataggcttt 646
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3458 aatataatcaagaaaatcaattcagctcgattcatatcgaaagtattataaataggcttt 3399

                                                                        
Query: 647  caagtgaactctctatgatcaacaacgacacttctgtcattgacattcttaaaaaaacca 706
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3398 caagtgaactctctatgatcaacaacgacacttctgtcattgacattctaaaaaaaacca 3339

                                                                        
Query: 707  accgagatatatctatactggagaaaactctttctcatctacgagccaaggctcgcatct 766
            ||  |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 3338 acgaagatatatctatactggagaaaactcttcctcatctacgagccaa-gctcgcatct 3280

                                                                        
Query: 767  aatggctc-aacaatacttggaaataaggaaacttccttagagcctagggtgggatgata 825
            ||| |||| |||||||||| ||||||| ||||| ||| ||||||||| ||| ||||||||
Sbjct: 3279 aat-gctcaaacaatactt-gaaataa-gaaac-tccctagagccta-ggttggatgata 3225

               
Query: 826  ttg 828
            |||
Sbjct: 3224 ttg 3222


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7934
Number of Sequences: 1807
Number of extensions: 7934
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)