BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1100 0.0
>3x_Contig1794
Length = 36744
Score = 1100 bits (555), Expect = 0.0
Identities = 602/611 (98%), Gaps = 5/611 (0%)
Strand = Plus / Plus
Query: 87 cagctttaatcgagtttggattttctacgagacaacaccctattggaatcatccatggtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31342 cagctttaatcgagtttggattttctacgagacaacaccctattggaatcatccatggtt 31401
Query: 147 tataaatgtcaatattaccgtagaaattagtagggattttaccatcagcatccacttgct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31402 tataaatgtcaatattaccgtagaaattagtagggattttaccatcagcatccacttgct 31461
Query: 207 taggaataacatactcagtctgaccaatggggtaaagcctctcttcatcttcgtcttctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31462 taggaataacatactcagtctgaccaatggggtaaagcctctcttcatcttcgtcttctt 31521
Query: 267 cgacaggattctttattttgtgtgtcaaaagatgcttggcacccgacttcaatgctcttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31522 cgacaggattctttattttgtgtgtcaaaagatgcttggcacccgacttcaatgctcttc 31581
Query: 327 cttgcatgtaccagtgcctagcactgtaacaagatattacatctttccttggaaaaactt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31582 cttgcatgtaccagtgcctagcactgtaacaagatattacatctttccttggaaaaactt 31641
Query: 387 tgagaagggagtttgatttattacgaagtcgaaggaagccgcactgctgagcacccggtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31642 tgagaagggagtttgatttattacgaagtcgaaggaagccgcactgctgagcacccggtt 31701
Query: 447 tcaatacctggtttgctctcaaatctttctctaagacgtagaacggatgattcttaatgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31702 tcaatacctggtttgctctcaaatctttctctaagacgtagaacggatgattcttaatgt 31761
Query: 507 cttgtaggctgtctgggatttcctcgtgttcattacgcaaatcaaaatattcatccctca 566
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 31762 cttgtaggctgtctgggattccctcgtgttcattacgcaaatcaaaatattcat-cctca 31820
Query: 567 taa-catcaatcctgttcctattacgtttatttaaaaactttattaatgctgttaaacca 625
||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 31821 taatcatcaatcctgttcctattacgtttattcaaaaacttta-taatgctgttaaacca 31879
Query: 626 tttcgttcagtttagacttctcttggaatactcttttttcgaactttattttgtaaatgt 685
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 31880 -ttcgttcagtttag-cttctcttgtaatcctcttttttcgaactttattttgtaaatgt 31937
Query: 686 gctatgtatct 696
|||||||||||
Sbjct: 31938 gctatgtatct 31948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9110
Number of Sequences: 1807
Number of extensions: 9110
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)