BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE09RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 1439 0.0
>3x_Contig1310
Length = 7790
Score = 1439 bits (726), Expect = 0.0
Identities = 789/805 (98%), Gaps = 4/805 (0%)
Strand = Plus / Plus
Query: 48 ccgaagctgctactttcgatccaagttctcgagtctatgattcttcatgagatcacctgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 ccgaagctgctactttcgatccaagttctcgagtctatgattcttcatgagatcacctgg 3755
Query: 108 acagccacccaattgttacaatagacctcttgttggctgatcggttccaccttttctttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 acagccacccaattgttacaatagacctcttgttggctgatcggttccaccttttctttc 3815
Query: 168 ataacttgagaactctcatcttttaaagtgaaaaagtctaatattgagagatgagcctta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3816 ataacttgagaactctcatcttttaaagtgaaaaagtctaatattgagagatgagcctta 3875
Query: 228 gcaactgagaaagtaactactcgtatccaaacaacacagtaaaaggatatacatagcact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3876 gcaactgagaaagtaactactcgtatccaaacaacacagtaaaaggatatacatagcact 3935
Query: 288 ggaataatattgccaaaacagtcacaatgacgaaagaggatgctattgagtatgctataa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3936 ggaataatattgccaaaacagtcacaatgacgaaagaggatgctattgagtatgctataa 3995
Query: 348 aggaattgcccaacattttgccactagatacagaacagatcaaagatctatgtgaacaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3996 aggaattgcccaacattttgccactagatacagaacagatcaaagatctatgtgaacaga 4055
Query: 408 cgataaaagaaggcaacaaccctgaacagatagcccaatccttttttgatcttttagggc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4056 cgataaaagaaggcaacaaccctgaacagatagcccaatccttttttgatcttttagggc 4115
Query: 468 aagacgactcatcggtacatttcatatttgagttcaatgagaggctcatggaattgcccc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4116 aagacgactcatcggtacatttcatatttgagttcaatgagaggctcatggaattgcccc 4175
Query: 528 gtaaaacggctgtcaagaaaccaatagtgaacgaaacaaccaatactaaaaaagtgatat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4176 gtaaaacggctgtcaagaaaccaatagtgaacgaaacaaccaatactaaaaaagtgatat 4235
Query: 588 ctccattgattaatactgtgaanaccaatgattccaggggccgagttcgccaacaagtct 647
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 4236 ctccattgattaatactgtgaaaaccaatgattcca-gggccgagttcgccaacaagtct 4294
Query: 648 attcaagcaacgaaaccgatattgaataggagattaaaaaaagtaccgactgccaaggct 707
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 4295 attcaagcaacgaaaccgatattgaatagagaattaaaaaaggtaccgactgccaaggct 4354
Query: 708 gtgaaaaaggattcggggaaagagagtaaagaagtcagattagattcattgaaggatatg 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 gtgaaaaaggattcggggaaagagagtaaagaagtcagattagattcattgaaggatatc 4414
Query: 768 gatgatgtgttaaagatgttggagatgaagtccatcttctgggaatttccggtccatata 827
|||||||||||||||||||||||||||| ||| || |||||| | |||||||| |||||
Sbjct: 4415 gatgatgtgttaaagatgttggagatgaggtcagtc-tctgggga-ttccggtcaatata 4472
Query: 828 aatggcaatggccagggaacaaggc 852
||| ||||| |||||||||||||||
Sbjct: 4473 aat-gcaattgccagggaacaaggc 4496
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6922
Number of Sequences: 1807
Number of extensions: 6922
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)