BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZE10FM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1777                                                        1106   0.0  

>3x_Contig1777 
          Length = 26319

 Score = 1106 bits (558), Expect = 0.0
 Identities = 596/606 (98%), Gaps = 2/606 (0%)
 Strand = Plus / Plus

                                                                         
Query: 74    catggcttctcttatcaaagatgaaattgcaagcttctctacaaaaatacaatccatttg 133
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11036 catggcttctcttatcaaagatgaaattgcaagcttctctacaaaaatacaatccatttg 11095

                                                                         
Query: 134   ctctgatcccgaaaacaattcagcgactacgtaaagatttggattatattttcttgccag 193
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11096 ctctgatcccgaaaacaattcagcgactacgtaaagatttggattatattttcttgccag 11155

                                                                         
Query: 194   gtccaagaagtactcgcccacgtgaagtggggtagaatgacaattatcgattctaaaccc 253
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11156 gtccaagaagtactcgcccacgtgaagtggggtagaatgacaattatcgattctaaaccc 11215

                                                                         
Query: 254   gtcaaaaatggttgcctgaagtcttgtatactctgacatcctctcccataaatacggaga 313
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11216 gtcaaaaatggttgcctgaagtcttgtatactctgacatcctctcccataaatacggaga 11275

                                                                         
Query: 314   atcctcaggtgcggaaccgtaccttaatttcacacagtccccccagacaatcacttctct 373
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11276 atcctcaggtgcggaaccgtaccttaatttcacacagtccccccagacaatcacttctct 11335

                                                                         
Query: 374   acgtaggtatgccttggagtcctttgatgcaaaatctactagtggattagagttccaaat 433
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11336 acgtaggtatgccttggagtcctttgatgcaaaatctactagtggattagagttccaaat 11395

                                                                         
Query: 434   ccagccattgttagccaatgcatattccttaccatctttggcaagcaatctggtgaaata 493
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11396 ccagccattgttagccaatgcatattccttaccatctttggcaagcaatctggtgaaata 11455

                                                                         
Query: 494   aggctcagttaatggcgattcatgagtgatttttcccatctttggaccatgatcattaat 553
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 11456 aggctcagttaatggcgattcaggagtgatttttcccatctttggaccatgatcatcaat 11515

                                                                         
Query: 554   ccgcaaatactttatgcgattgtataattggtctaagattacgcgaacgttcttatcgta 613
             |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 11516 ccgcaaatactttatgcgattgtataattggtctaagattacgcgaacgtcctcatcgta 11575

                                                                         
Query: 614   ttccttgttcaagggttaattcaattcattcaaaatttttgcgtgctttaatttgcaaca 673
             |||||||| ||||||| |||||||||||| ||||| |||||||||| || ||||||||||
Sbjct: 11576 ttccttgtacaagggtaaattcaattcatccaaaa-ttttgcgtgc-ttcatttgcaaca 11633

                   
Query: 674   ttgcca 679
             ||||||
Sbjct: 11634 ttgcca 11639


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7012
Number of Sequences: 1807
Number of extensions: 7012
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)