BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE11FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 1411 0.0
>3x_Contig1250
Length = 5563
Score = 1411 bits (712), Expect = 0.0
Identities = 802/823 (97%), Gaps = 7/823 (0%)
Strand = Plus / Plus
Query: 87 ttaatttatcgactgtatcctcattctgtgacgggtgctcacttacgtttgctaatataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3834 ttaatttatcgactgtatcctcattctgtgacgggtgctcacttacgtttgctaatataa 3893
Query: 147 tcaagagtccgtatagatcagtcggtgtagtgtcctgtgacttgatcagctcgattattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tcaagagtccgtatagatcagtcggtgtagtgtcctgtgacttgatcagctcgattattt 3953
Query: 207 tcaaacatacatcaccgttacctcgtagcaagactctgacagagggcttcaatgtcaagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 tcaaacatacatcaccgttacctcgtagcaagactctgacagagggcttcaatgtcaagt 4013
Query: 267 aagctaaagcttcagtattaatctcgatattttcgccattcgaaagcgagtcgatgaaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 aagctaaagcttcagtattaatctcgatattttcgccattcgaaagcgagtcgatgaaaa 4073
Query: 327 ggttgatgcaagagttaagagtttccttttctatcttagtgaatgaccagatcttgatca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 ggttgatgcaagagttaagagtttccttttctatcttagtgaatgaccagatcttgatca 4133
Query: 387 aaaccaacgcagtcagtactttatacttctcgaccttaaatgattgttgtaacgtcttaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 aaaccaacgcagtcagtactttatacttctcgaccttaaatgattgttgtaacgtcttaa 4193
Query: 447 ggtaatgctctgcaatgaatcttctgactgcttcgtcaatacaggaaacagccaagagac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 ggtaatgctctgcaatgaatcttctgactgcttcgtcaatacaggaaacagccaagagac 4253
Query: 507 gaagagccccgtttacaagatgttcatcatccgctgaagaattcaaattcctagtcaata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 gaagagccccgtttacaagatgttcatcatccgctgaagaattcaaattcctagtcaata 4313
Query: 567 tgtcctggaaatctgtcgaaagaaacatgtctctacaaacgccaaggcagatagggaaca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tgtcctggaaatctgtcgaaagaaacatgtctctacaaacgccaaggcagatagggaaca 4373
Query: 627 ccaaagacatagcatctacaagcaaacgtaaagaaacattgccagaatcttcctcggctt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 ccaaagacatagcatctacaagcaaacgtaaagaaacattgccagaatcttcctcggctt 4433
Query: 687 caattaacaattgttgtagtatattcccacacttttgctccgtattatctgaatggtttg 746
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 4434 caattaacaattgttgtagtatattcccacacttctgctccgtattatctgaatggttgg 4493
Query: 747 acatcaacgatttcatcgttacaagaagtaattggccgnatctctttggatgctaccttc 806
||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||| ||||
Sbjct: 4494 acatcaacgatttcatcgttacaagaagtaa-tggccgtatctc-ttgtatgcta-cttc 4550
Query: 807 ttaaaagtattctttctgcaaagaaacttccattgaccccaattcttttacat-acccgc 865
|||||||||||| ||||||||||||||| | ||||||||||| || || |||| ||| ||
Sbjct: 4551 ttaaaagtattc-ttctgcaaagaaactccaattgaccccaa-tccttcacataaccggc 4608
Query: 866 aagcattggcacacactttcaggcattgggttttctcgccatt 908
|||||| ||||||||||| || |||| | |||| |||||||||
Sbjct: 4609 aagcatcggcacacacttcca-gcatcgtgtttcctcgccatt 4650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5951
Number of Sequences: 1807
Number of extensions: 5951
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)