BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE11RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1598 0.0
>3x_Contig1411
Length = 7271
Score = 1598 bits (806), Expect = 0.0
Identities = 853/865 (98%), Gaps = 3/865 (0%)
Strand = Plus / Plus
Query: 48 cgatatatacaacgtacatccgttgaaacgtatcatgagtcaagagatgcccgatgctgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 cgatatatacaacgtacatccgttgaaacgtatcatgagtcaagagatgcccgatgctgg 5439
Query: 108 taccatcagaatgttgcatcgcacaaactacattgcatttgttagtacaaagaaagagtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 taccatcagaatgttgcatcgcacaaactacattgcatttgttagtacaaagaaagagtt 5499
Query: 168 acttcatatttgggatgacgttaagaaacaagatatcacaagagttaagctcgatgctgc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 acttcatatttgggatgacgttaagaaacaagatatcacaagagttaagctcgatgctgc 5559
Query: 228 tgttaaggacttgtttctttcaagggagtttatagtagtatcacagggcgatgtgatatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 tgttaaggacttgtttctttcaagggagtttatagtagtatcacagggcgatgtgatatc 5619
Query: 288 cattttcaagtttggtaacccctggaataagattactgaagacattaagttcggaggagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 cattttcaagtttggtaacccctggaataagattactgaagacattaagttcggaggagt 5679
Query: 348 gtgcgagtttgccaatggattgttggtgtactccaatgagttcaatctgggtcagatcca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 gtgcgagtttgccaatggattgttggtgtactccaatgagttcaatctgggtcagatcca 5739
Query: 408 cgtaactagattgcagaccgatgcagagcaggttgttggaaaaggtgtcctagtgaaggc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 cgtaactagattgcagaccgatgcagagcaggttgttggaaaaggtgtcctagtgaaggc 5799
Query: 468 ccatgccaatccagtgaaaatggtaagattaaataggaaaggagacatggttgccacttg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5800 ccatgccaatccagtgaaaatggtaagattaaataggaaaggagacatggttgccacttg 5859
Query: 528 ttcgcaggatggaacgctaattagagttttccaaacggacaatggagtcttggttcgaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 ttcgcaggatggaacgctaattagagttttccaaacggacaatggagtcttggttcgaga 5919
Query: 588 gtttagaagaggactggacagaactagtattatagatatgcgttggtcaccagatggatc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 gtttagaagaggactggacagaactagtattatagatatgcgttggtcaccagatggatc 5979
Query: 648 aaaattagctgttgtcagtgacaaatggacgttacacgtttttgaagtgttcaatgacgc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5980 aaaattagctgttgtcagtgacaaatggacgttacacgtttttgaagtgttcaatgacgc 6039
Query: 708 cgagaac-agagacacgtacttaaggattggatcaatatanagtacttccaaagcgagtg 766
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6040 cgagaacaagagacacgtacttaaggattggatcaatataaagtacttccaaagcgagtg 6099
Query: 767 gagcatttgcaatttttaattgaaggtcagttaaggatccaatgactgcaaaatcgcatg 826
|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 6100 gagcatttgcaattttaaattgaaggtcagtaaaggctccaatgactgcaaaatcgcatg 6159
Query: 827 aatatcagatacaggtctcggtattagtttggcccaataggaaggttggcagattctttt 886
||||||||||||||||||| || |||| |||||||||| |||||||||||||| |||||
Sbjct: 6160 gatatcagatacaggtctcgtta-tagtatggcccaata-gaaggttggcagatactttt 6217
Query: 887 aaattgaacttcaacgatgacgagc 911
|||||||||| ||||||||||||||
Sbjct: 6218 aaattgaactacaacgatgacgagc 6242
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5771
Number of Sequences: 1807
Number of extensions: 5771
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)