BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE12FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1372 0.0
>3x_Contig1521
Length = 8057
Score = 1372 bits (692), Expect = 0.0
Identities = 753/770 (97%), Gaps = 3/770 (0%)
Strand = Plus / Plus
Query: 87 cggtacatgaaataaaagaggctggtttctataaggtatatgtgaaggatgagattgatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 cggtacatgaaataaaagaggctggtttctataaggtatatgtgaaggatgagattgatc 1063
Query: 147 taacagggttaaaagcagtaatagaagagaagttgaaaagtttaattaaggacaacgatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 taacagggttaaaagcagtaatagaagagaagttgaaaagtttaattaaggacaacgatt 1123
Query: 207 tcatttataactatttgataccagctgatgtgagcatagaaagcatcaaaaccatggacg 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 tcatttataacgatttgataccagctgatgtgagcatagaaagcatcaaaaccatggacg 1183
Query: 267 ccgtaaagccagtgacctgggaagaacagctcaaggtatacctagagcaggttgtagatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 ccgtaaagccagtgacctgggaagaacagctcaaggtatacctagagcaggttgtagatc 1243
Query: 327 tctgtaatggtgcctttaaaggtatagtgcctatggaagtctatgaaaatgagagtatct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 tctgtaatggtgcctttaaaggtatagtgcctatggaagtctatgaaaatgagagtatct 1303
Query: 387 attctgaggaaaaagcttcattgttaagaaaggaggtcgaggagacggatacagcagact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 attctgaggaaaaagcttcattgttaagaaaggaggtcgaggagacggatacagcagact 1363
Query: 447 gggaatatcaatcattcattgaatttactgacttaccgaaacttatcaaagaccttgaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 gggaatatcaatcattcattgaatttactgacttaccgaaacttatcaaagaccttgaat 1423
Query: 507 caagatatgtacacggtggaaatggttcatcagatgaccctcaatatgaaataatgaagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 caagatatgtacacggtggaaatggttcatcagatgaccctcaatatgaaataatgaagc 1483
Query: 567 aaaaaataactacttggtcaaaagttgtgcaagacagtaatttcaaagatgtaagagcgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 aaaaaataactacttggtcaaaagttgtgcaagacagtaatttcaaagatgtaagagcgc 1543
Query: 627 anatgcaaaatattcttgacanaagaaatgagattcttacaattttatcctctgtctctc 686
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 aaatgcaaaatattcttgacaaaagaaatgagattcttacaattttatcctctgtctctc 1603
Query: 687 ctgat-aaaaggaaaatgccttg-aaatcaagaactctttagtgcaggcatctcaatctg 744
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1604 ctgatcaaagggaaaatgccttgaaaatcaagaactctttagtgcaggcatctcaatctg 1663
Query: 745 atgacaaatattttgcatctatcaatccatgcttggaggaaggttatttggtagcaaacc 804
|||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 1664 atgacaaaatatttgcatctatcaatccatgcttggaggaagttaatttgttagcaaacc 1723
Query: 805 atcagttattggggagcctaatgagtaaatttca-attaggaatgatgaa 853
||||||||||| ||||| |||||||||||| ||| || ||||||||||||
Sbjct: 1724 atcagttattgtggagcataatgagtaaatctcagataaggaatgatgaa 1773
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7173
Number of Sequences: 1807
Number of extensions: 7173
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)