BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZE12RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 1489 0.0
>3x_Contig1331
Length = 5830
Score = 1489 bits (751), Expect = 0.0
Identities = 813/826 (98%), Gaps = 6/826 (0%)
Strand = Plus / Minus
Query: 47 cgtctacatcttca-tttcc-cagtgtcactgagccttagttttgccaaggcctgtgata 104
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 cgtctacatcttcaatttccacagtgtcactgagccttagttttgccaaggcctgtgata 1821
Query: 105 gtctgataattgcaagtaaagttctaggtgttgcttgcccaaacgagaatttagaatcca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 gtctgataattgcaagtaaagttctaggtgttgcttgcccaaacgagaatttagaatcca 1761
Query: 165 acgctttcttagagtcttgtctcattcttgtataagatagaactatgtgttcattgacat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 acgctttcttagagtcttgtctcattcttgtataagatagaactatgtgttcattgacat 1701
Query: 225 cagctgacaacacaggtctcttagtcttggcgtatgcaatatactctctcatttcgctcg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 cagctgacaacacaggtctcttagtcttggcgtatgcaatatactctctcatttcgctcg 1641
Query: 285 aaggaattggttcgaaaccaaaatcaggttgcctgtcatacatatgaacgtacgtgacgt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 aaggaattggttcgaaaccaaaatcaggttgcctgtcatacatatgaacgtacgtgacgt 1581
Query: 345 gttctgctaacttctcatcgttttctttgcttggcatatcgagtagtaaaaacatgatat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 gttctgctaacttctcatcgttttctttgcttggcatatcgagtagtaaaaacatgatat 1521
Query: 405 cgaatctagacaaaagagctgctggtagattaatattttcaagtggagataaccttggat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 cgaatctagacaaaagagctgctggtagattaatattttcaagtggagataaccttggat 1461
Query: 465 tataccttccgtatagcgggttagcagctgccaatatggaggctctggcatttaaagtag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 tataccttccgtatagcgggttagcagctgccaatatggaggctctggcatttaaagtag 1401
Query: 525 tgttaatacctgccttagaaattgaaatggtttgttgttccataacttcatggatagcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 tgttaatacctgccttagaaattgaaatggtttgttgttccataacttcatggatagcag 1341
Query: 585 ttctatcactttcatccatcttatcaaattcatcgatacaacagataccgttatcggcaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 ttctatcactttcatccatcttatcaaattcatcgatacaacagataccgttatcggcaa 1281
Query: 645 ggacgagggcaccaccttctagcaccatttcatcagtcactggatccttcataacggcgg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 ggacgagggcaccaccttctagcaccatttcatcagtcactggatccttcataacggcgg 1221
Query: 705 ctgttagacctacaccagaagaacccttaccagttgtatagacccctctcgnagaaattt 764
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1220 ctgttagacctacaccagaagaacccttaccagttgtatagacacctctcggagaaattt 1161
Query: 765 tacagatggatttcattatttgagatttagcaacaccaggatcaccccatcaagcaaatg 824
||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1160 tacagatagatttcaataattgagatttagcaacaccaggatca-cccatcaagcaaatg 1102
Query: 825 tttatattaccctctgattttttagaccattccccgactttttttt 870
|| |||| | ||||||| ||||||||||| ||||||||||||||||
Sbjct: 1101 ttaatatca-cctctga-tttttagacca-tccccgactttttttt 1059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6939
Number of Sequences: 1807
Number of extensions: 6939
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)