BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF01FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig864 1419 0.0
>3x_Contig864
Length = 2808
Score = 1419 bits (716), Expect = 0.0
Identities = 770/784 (98%), Gaps = 3/784 (0%)
Strand = Plus / Plus
Query: 86 ctcgcttctgacttcatttagcaattctaactgtttgtgagttgcagtatgtttctttct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctcgcttctgacttcatttagcaattctaactgtttgtgagttgcagtatgtttctttct 574
Query: 146 ttgatcgtattccaacattgccttcctgaaaaactgacctcctgacgagttcttctctat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgatcgtattccaacattgccttcctgaaaaactgacctcctgacgagttcttctctat 634
Query: 206 tccgtctataataattctcctagaatctttgattaatggttccatgtccttataaatcga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tccgtctataataattctcctagaatctttgattaatggttccatgtccttataaatcga 694
Query: 266 agggctcttgtgagaagttaaattctcacttccatctaaaatatagagtaagtaccatag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agggctcttgtgagaagttaaattctcacttccatctaaaatatagagtaagtaccatag 754
Query: 326 cttctcaaactgaggagaataaagctggtcaaccctccatactcttgccaaatgtaatgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cttctcaaactgaggagaataaagctggtcaaccctccatactcttgccaaatgtaatgc 814
Query: 386 taacgaactaaacatcttgctcgatgacaaccataatgacgcaattattaaccccaaaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 taacgaactaaacatcttgctcgatgacaaccataatgacgcaattattaaccccaaaat 874
Query: 446 cgtgtgttctacatttaattcagcatctgtgggaagaagtaactgtgatgcaaaccaatg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cgtgtgttctacatttaattcagcatctgtgggaagaagtaactgtgatgcaaaccaatg 934
Query: 506 caatgatgaatgcaactcatggaatttataatcaagttctgggtgatgacaacaagctat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 caatgatgaatgcaactcatggaatttataatcaagttctgggtgatgacaacaagctat 994
Query: 566 cgtacagatcgaggctaagagcagcggagaatcggaccataaggattgtacactaacacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 cgtacagatcgaggctaagagcagcggagaatcggaccataaggattgtacactaacacc 1054
Query: 626 tcctaaagtaaaaccaaataaatgagggctaaagtattgaataaaataatctagcaaaac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 tcctaaagtaaaaccaaataaatgagggctaaagtattgaataaaataatctagcaaaac 1114
Query: 686 ttttgcctgttccttcgtaatcgaaccagcagttctaaagtttgtgacagtgacctttct 745
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1115 ttttgcctgttccttcgtaatcgaaccagcagttctaaagtctgtgacagtgacctttct 1174
Query: 746 gttgtcaattatttcttgaagagtactattagtaaccgctcctctgctgttgttcatata 805
||||||||||||||| ||| |||||||| |||||| |||| |||||||||||||||| ||
Sbjct: 1175 gttgtcaattatttcatgatgagtactagtagtaa-cgctactctgctgttgttcat-ta 1232
Query: 806 aaggtggggtttccatttccccgccaaggcggtttggaaagttccttttaaaaattggac 865
||||||||||||||||| |||||| |||||||| ||| ||||||| ||| |||||||||
Sbjct: 1233 aaggtggggtttccattaccccgcaaaggcggtatgg-aagttccatttgaaaattggag 1291
Query: 866 cgaa 869
||||
Sbjct: 1292 cgaa 1295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6554
Number of Sequences: 1807
Number of extensions: 6554
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)