BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF01RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 1637 0.0
>3x_Contig1671
Length = 12265
Score = 1637 bits (826), Expect = 0.0
Identities = 842/848 (99%)
Strand = Plus / Plus
Query: 50 ctctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcaga 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6460 ctctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcaga 6519
Query: 110 tccactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgtttt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6520 tccactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgtttt 6579
Query: 170 ctgtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6580 ctgtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactc 6639
Query: 230 atattttttattgagcatgagatagaatcttgttatggcaagccttatgcatattagtaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6640 atattttttattgagcatgagatagaatcttgttatggcaagccttatgcatattagtaa 6699
Query: 290 agctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacata 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6700 agctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacata 6759
Query: 350 tgcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaactttt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6760 tgcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaactttt 6819
Query: 410 ggctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatgga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6820 ggctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatgga 6879
Query: 470 agataagtctttgttatacctttgaactaacttcttaacatcattatcgccacttacaat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 agataagtctttgttatacctttgaactaacttcttaacatcattatcgccacttacaat 6939
Query: 530 ctttcgtacggcgctcaacatgttaaggtatcaatatctacttccctttgatgtccgatc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6940 ctttcgtacggcgctcaacatgttaaggtatcaatatctacttccctttgatgtccgatc 6999
Query: 590 tcgagaaaccctttattttaggtagtccatttttttttacatagttgtttgtaggctata 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7000 tcgagaaaccctttattttaggtagtccatttttttttacatagttgtttgtaggctata 7059
Query: 650 atgatccttttaatatcaaatccatgttatttctaaatcatattgacgaaaaattattga 709
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7060 atgatcctttaaatatcaaatccatgttatttctaaatcatattgacgaaaaattattga 7119
Query: 710 aattgatgaattcgggaacagacgatggaatgacgccaaaacaagtcagtttgggtttct 769
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7120 aattgaagaattcgggaacagacgatggaatgacgccaaaacaagtcagtttgggtttct 7179
Query: 770 taaaaccttatatattcatacaaatatcgcttggatactgcctttgcacccaaacttcta 829
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7180 taaaaccttatatatccatacaaatatcgcttggatactgcctttgcacccaaacttcta 7239
Query: 830 gttatgccaagtgtggatatttncgntaatcaattgatagatatattcgcggaagatcgc 889
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 7240 gttatgccaagtgtggatatttccgttaatcaattgatagatatattcgcggaagatcgc 7299
Query: 890 gattcacc 897
||| ||||
Sbjct: 7300 gatacacc 7307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7432
Number of Sequences: 1807
Number of extensions: 7432
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)