BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF02FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1396 1364 0.0
>3x_Contig1396
Length = 8488
Score = 1364 bits (688), Expect = 0.0
Identities = 760/774 (98%), Gaps = 8/774 (1%)
Strand = Plus / Minus
Query: 82 tgaattgccgagtgatcagagaatagtgaaaaatcaaaatgaagcaaagcacgtgatgtc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 tgaattgccgagtgatcagagaatagtgaaaaatcaaaatgaagcaaagcacgtgatgtc 3308
Query: 142 cgggtaatgtcattcctcaaaccaccacacaatttggcgtcaccaaagaacgtcagttta 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 cgggtaatgtcattcctcaaaccaccacacaatttggcgtcaccaaagaacgtcagttta 3248
Query: 202 gggttgcaggcatctccatattctagtaggaaaaaacagtcccaatcttcaacttttcag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3247 gggttgcaggcatctccatattctagtaggaaaaaacagtcccaatcttcaacttttcag 3188
Query: 262 ttagaaattatcaactcaattgttacttgcccagccaactataacggggtaactaaaaat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3187 ttagaaattatcaactcaattgttacttgcccagccaactataacggggtaactaaaaat 3128
Query: 322 tgcctttttttcttcatttagggacttgttaccgtcaggctgacacaaataacacgcatt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3127 tgcctttttttcttcatttagggacttgttaccgtcaggctgacacaaataacacgcatt 3068
Query: 382 gaatatttgacgtctcgaatggaaaatcaccactgtccgattattagggtctaaatactc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3067 gaatatttgacgtctcgaatggaaaatcaccactgtccgattattagggtctaaatactc 3008
Query: 442 tgcatattggaatgattctctgaaattatttccaataaaatttgctgagatttattttta 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3007 tgcatattggaatgattctctgaaattatttccaataaaatttgctgagatttattttta 2948
Query: 502 tatcctatgaacaaacgatcaattcaggtgtcgatttagtattgagatctcattattatt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2947 tatcctatgaacaaacgatcaattcaggtgtcgatttagtattgagatctcattattatt 2888
Query: 562 gatgaattgattagatttggacagaagcaagaagt-caacgaatagccaaataattatcc 620
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2887 gatgaattgattagatttggacagaagcaagaagtccaacgaatagccaaataattatcc 2828
Query: 621 agaatggcggataaagttagcttcacaaaaaggaaattgataaaatattcctcaatgatt 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2827 agaatggcggataaagttagcttcacaaaaaggaaattgataaaatattcctcaatgatt 2768
Query: 681 tgcgggttctttggaagaatgcngcgagttagatttgacggatggaggatttanaggata 740
||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct: 2767 tgc-ggttctttggaagaatgcggcgagttagatttgacggatgga-gatttagaggata 2710
Query: 741 tattagtaccaccaagtagagattattgtgctgcctga-aattggaatggtgcaaataac 799
|||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 2709 tattagtaccacaaagtagagataattgtgctg-ctgagaattggaatggtgcaaataac 2651
Query: 800 t-caccccttccatttcacctgctgattattattatcgaaaggaaaactccttt 852
| ||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 2650 tacacccattcaatttcacctgctgatta-tattatcgaaa-gaaaactccttt 2599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7859
Number of Sequences: 1807
Number of extensions: 7859
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)