BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF02RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1434 1421 0.0
>3x_Contig1434
Length = 8845
Score = 1421 bits (717), Expect = 0.0
Identities = 796/814 (97%), Gaps = 8/814 (0%)
Strand = Plus / Plus
Query: 74 ataactttataaaaaacccttgaagttagtattaactgggaaactgaaactatgaacaga 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataactttataaaaaacccttgaagttagtattaactgggaaactgaaactatgaacaga 60
Query: 134 atataatcttaagtaaacctgttgcctaagaatcgagcgatggatattattagattaggg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atataatcttaagtaaacctgttgcctaagaatcgagcgatggatattattagattaggg 120
Query: 194 aaaaagtaatcagagaattaaattataaggacaaggtcaaccattcccagctggttacat 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaagtaatcagagaattaaattataaggacaaggtcaaccattcccagctggttacat 180
Query: 254 ctccagggggtttccctttgttttttggattttcagtttgtgattccgcttgatgttgat 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctccagggggtttccctttgttttttggattttcagtttgtgattccgcttgatgttgat 240
Query: 314 attgcgatgatttttgattatctttctctacttgggaggattgtttgcgaataaaatctt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attgcgatgatttttgattatctttctctacttgggaggattgtttgcgaataaaatctt 300
Query: 374 gatccataaaaccttccaaattgttcgagatctgcgcggattttgctggtgattcatcgt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatccataaaaccttccaaattgttcgagatctgcgcggattttgctggtgattcatcgt 360
Query: 434 tgaaagattctactttaccgagactgggaaaattgaaaagagcattttgcggcagtgatg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaaagattctactttaccgagactgggaaaattgaaaagagcattttgcggcagtgatg 420
Query: 494 gagaggcgcttccctgcctttgcaactgcaagttcgcagttggtgttgttggtttaccca 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gagaggcgcttccctgcctttgcaactgcaagttcgcagttggtgttgttggtttaccca 480
Query: 554 gttttttcttcaaagcatatctcttcttatctggggagatggcgtttgtcggagagccgg 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttttttcttcaaagcatatctcttcttatctggggagatggcgtttgtcggagagccgg 540
Query: 614 tagaaatcgcagagttattattctcgttgatcccgctgttgatgcttgcgttactgttat 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagaaatcgcagagttattattctcgttgatcccgctgttgatgcttgcgttactgttat 600
Query: 674 tgttacttgatgctaatccacttgttaaaagtgacgatacttgtttagatttgttagatg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgttacttgatgctaatccacttgttaaaagtgacgatacttgtttagatttgttagatg 660
Query: 734 atctttgnctcttcttga-cacatcctttttcaa-gacaat-gccttacaac-ccgtgna 789
||||||| |||||||||| ||||||||||||||| |||||| |||||||||| ||||| |
Sbjct: 661 atctttgtctcttcttgatcacatcctttttcaaggacaatggccttacaacaccgtgaa 720
Query: 790 gtttcaaaa--caaccac-agcattacac-acgggttaccttggagatctcttctccata 845
||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||
Sbjct: 721 gtttcaaaaacaaaccacaagcattacacaacgggttaccttgaggatctcttctccata 780
Query: 846 aaggtgtcgccttcgtatggacatttgaacattg 879
| ||||||| ||||||||| ||||||||||||
Sbjct: 781 agggtgtcgtcttcgtatgacaatttgaacattg 814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6765
Number of Sequences: 1807
Number of extensions: 6765
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)