BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF03RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1578 0.0
>3x_Contig1611
Length = 15286
Score = 1578 bits (796), Expect = 0.0
Identities = 871/890 (97%), Gaps = 5/890 (0%)
Strand = Plus / Minus
Query: 48 tgtttctcgttca-tggctctttttgtttaagtaaaacacttcgaactacttgtctcgta 106
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3515 tgtttctcgttcaatggctctttttgtttaagtaaaacacttcgaactacttgtctcgta 3456
Query: 107 tttctatcaaaagaatcaccatgaatattgtttgccagaatgtttctcgcacaatttatc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3455 tttctatcaaaagaatcaccatgaatattgtttgccagaatgtttctcgcacaatttatc 3396
Query: 167 acaatgaaatcgttagcgatttcagagacatgaccagttccaatggctaactggccagag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3395 acaatgaaatcgttagcgatttcagagacatgaccagttccaatggctaactggccagag 3336
Query: 227 gtgtcgttactgatcattatataatctcctttatggatatctgacgagagcatgctaggt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3335 gtgtcgttactgatcattatataatctcctttatggatatctgacgagagcatgctaggt 3276
Query: 287 ggagcgctcttgagtttcttggtctcctgttgttctgcattggaagtggcaaatgaccct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3275 ggagcgctcttgagtttcttggtctcctgttgttctgcattggaagtggcaaatgaccct 3216
Query: 347 tgaatatcgttttcgcggcagaaagtgtacagatatctcccgtttccctgatcctgtaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 tgaatatcgttttcgcggcagaaagtgtacagatatctcccgtttccctgatcctgtaca 3156
Query: 407 ttctttatggtaagctgacttatgcaatgtcctgtttgagcctctcgatctgtgcccgac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 ttctttatggtaagctgacttatgcaatgtcctgtttgagcctctcgatctgtgcccgac 3096
Query: 467 ataaggaaagtatctttagtgacacttgttatgctagtttcttccatcattaaaagccta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3095 ataaggaaagtatctttagtgacacttgttatgctagtttcttccatcattaaaagccta 3036
Query: 527 tcgtacttgccgtaaaacgaccgaaagagctctaggacctgtgagccttgtgcttcaaga 586
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 3035 tcgtacttgccgtaaaacgaccgatagatctctaggacctgtgagccttgtgcttcaaga 2976
Query: 587 tgtctggttaaatcagtatattcatgctttagcaatcctggcgtttgttctttgtcactt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2975 tgtctggttaaatcagtatattcatgctttagcaatcctggcgtttgttctttgtcactt 2916
Query: 647 aacttgttgagcaccatgcaagatgtcttcatgaaacattgatcgcacttggagttctgt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2915 aacttgttgagcaccatgcaagatgtcttcatgaaacattgatcgcacttggagttctgt 2856
Query: 707 atcattgcgggtaattcatgttgtggtccaccccaatcagacatctcttcattcattact 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2855 atcattgcgggtaattcatgttgtggtccaccccaatcagacatctcttcattcattact 2796
Query: 767 tgnaggtatgtcgcaagtttatttcttgagttaagcagatgctttagcgata-taaaatt 825
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 2795 tgtaggtatgtcgcaagtttatttctgaggttaagcagatgctttagcgatattaaaatt 2736
Query: 826 ttggtttgt-atgagaactctcttaanctta-tattcaacatcatgtgcaaatttacagg 883
|||| |||| |||||||||||||| | |||| ||| ||||||||||||||||||||||||
Sbjct: 2735 ttgggttgtaatgagaactctctt-agcttagtatacaacatcatgtgcaaatttacagg 2677
Query: 884 gatgtcttatctatcctgggaaagcaatgtttaaattagaacctgtgcct 933
|||||| |||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 2676 gatgtcatatctatcctggagaagcaatgtataaattagaccctgtgcct 2627
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5711
Number of Sequences: 1807
Number of extensions: 5711
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)