BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF04FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 547 e-155
3x_Contig657 329 6e-90
>3x_Contig846
Length = 2695
Score = 547 bits (276), Expect = e-155
Identities = 293/299 (97%)
Strand = Plus / Plus
Query: 86 tttaatcgtacatagtgtaaagttggcattctgccgtgcagggaataagatgtaaatacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 tttaatcgtacatagtgtaaagttggcattctgccgtgcagggaataagatgtaaatacc 2456
Query: 146 gatcgtgaaattaccaagaggcgtatttccaaagacggttgactaacaccccagactact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 gatcgtgaaattaccaagaggcgtatttccaaagacggttgactaacaccccagactact 2516
Query: 206 tgctgagatcagccacttggtttagctattctgtgtctatggcgatttgaagagctagag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517 tgctgagatcagccacttggtttagctattctgtgtctatggcgatttgaagagctagag 2576
Query: 266 atgatcatggaagatccctgcggttgtaggtggaatcaaggtaattcgcccattcctttg 325
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 atgatcatggaagagtcctgcggttgtaggtggaatcaaggtaattcgcccattcctttg 2636
Query: 326 ttcataagctgtatcacgtgattaggttaattcgtttttagtttatttacttactgaga 384
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2637 ttcataagctgtatcacgtgattaggttaatntcgttttagtttatttacttactgaga 2695
>3x_Contig657
Length = 1917
Score = 329 bits (166), Expect = 6e-90
Identities = 280/309 (90%), Gaps = 8/309 (2%)
Strand = Plus / Minus
Query: 482 caggaaatattcattatacgtggacttatatacattgatataatccatctatatgatgag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 caggaaatattcattatacgtggacttatatacattgatataatccatctatatgatgag 1858
Query: 542 ttaaggtaatctttgcgccaaagtagcctttaaaaaaaagttaaaggatcaagtcacacc 601
|||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 1857 ttaaggtaatctttccgccaaagtagccttaaaaaaaaagtaaaaggatcaagtcacacc 1798
Query: 602 agatcagacccaattaattgattagtgtttttgatttgatagtttcga-tttat-atttg 659
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| || ||
Sbjct: 1797 agatcagaccaaattaattgattagtgtttttgatttgatagttccgattttataatatg 1738
Query: 660 atgaagaaaaaaggt-ttgtacagaacaaa--atttagttctca-cattaatttatggac 715
|||||||||||| || ||||||| ||||| ||| | |||||| |||| || ||||||
Sbjct: 1737 atgaagaaaaaaagtattgtacaagacaaaatattaatttctcagaattagttcatggac 1678
Query: 716 tttaccaa-ttgttgatg-attttttacgggtaccaaaggaaccaccttggatgaaatgc 773
|| ||||| ||||||||| ||| || |||| |||| || ||||||||||||||||| |||
Sbjct: 1677 ttgaccaatttgttgatgaattcttcacggttaccgaaagaaccaccttggatgaagtgc 1618
Query: 774 ttgaacttt 782
|||||||||
Sbjct: 1617 ttgaacttt 1609
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7057
Number of Sequences: 1807
Number of extensions: 7057
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)