BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF04RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1477 1300 0.0
>3x_Contig1477
Length = 9322
Score = 1300 bits (656), Expect = 0.0
Identities = 736/760 (96%), Gaps = 2/760 (0%)
Strand = Plus / Plus
Query: 48 cataaaactaaccaacttattgaagattttggtaccattaggcaagaaaaagattgaacc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 cataaaactaaccaacttattgaagattttggtaccattaggcaagaaaaagattgaacc 2118
Query: 108 aggtgatattggatctgttatgtataactcctgtttggtcgatacctcatgtgcagtggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 aggtgatattggatctgttatgtataactcctgtttggtcgatacctcatgtgcagtggt 2178
Query: 168 ggctgcactatcgacagcttgtgggccctcattatgattggaacagagtcttttgacaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 ggctgcactatcgacagcttgtgggccctcattatgattggaacagagtcttttgacaaa 2238
Query: 228 ctgacaaggtacgcccgcatttcgtactggtaggtagtttattcgctttaataacatatt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 ctgacaaggtacgcccgcatttcgtactggtaggtagtttattcgctttaataacatatt 2298
Query: 288 tcagaacgagtctcttcaatgaatctgcccacagcgaactctcagctcgttgttgtaatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 tcagaacgagtctcttcaatgaatctgcccacagcgaactctcagctcgttgttgtaatt 2358
Query: 348 acatttctaattcgatctttccagtgtaggtagtttccatgcatggttgtttagtttttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 acatttctaattcgatctttccagtgtaggtagtttccatgcatggttgtttagtttttt 2418
Query: 408 tcactatttaactcagtagaaacttgaagttcccacttgcatgtgatgagacagaacgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 tcactatttaactcagtagaaacttgaagttcccacttgcatgtgatgagacagaacgat 2478
Query: 468 gcaatgtagaacatggacctatctgcctacagtactacttgcttcaaagttagctagacg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 gcaatgtagaacatggacctatctgcctacagtactacttgcttcaaagttagctagacg 2538
Query: 528 aatagagttacttacatttgatctcttttatatatatatgatattacgagagttgccaat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aatagagttacttacatttgatctcttttatatatatatgatattacgagagttgccaat 2598
Query: 588 agataataaatacatcgttattgagtccaaataacgatctagagttcggagttcagataa 647
|||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct: 2599 agataataaatacatcgttattgagtccaaataacgatttagaattcggagtcaagataa 2658
Query: 648 tgctgttagccctcgaactcagacgccctataaaaggcaactttttcttgccatttgccc 707
|||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||| ||
Sbjct: 2659 tgctgtaagccctcgaactcagacgccttataaagggcaacttttccttgccatttg-cc 2717
Query: 708 tccattttacccttcgcaccctttcagctgagatactactggatttcaccttggctgaca 767
|||||||| ||| ||| ||||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 2718 tccatttttacctccgccacctttcagctgagatactact-gatttcaacttgtctgaca 2776
Query: 768 cctcttggatttggttcttagaatccgaaaccaggatgat 807
||||||||||| ||| ||||||| ||||| | ||||||
Sbjct: 2777 cctcttggattctgttactagaatcagaaacaatgatgat 2816
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8234
Number of Sequences: 1807
Number of extensions: 8234
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)