BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF05FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1404 1598 0.0
>3x_Contig1404
Length = 8096
Score = 1598 bits (806), Expect = 0.0
Identities = 835/841 (99%), Gaps = 3/841 (0%)
Strand = Plus / Plus
Query: 87 ttcgctgcgtacgagaaaccttacggaaaacttactattgtcgatgggtatgtggctacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 ttcgctgcgtacgagaaaccttacggaaaacttactattgtcgatgggtatgtggctacg 1781
Query: 147 gcacaagggaaggaatccaataacttcttttttgcaaatggcgttccagaactgaaccga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 gcacaagggaaggaatccaataacttcttttttgcaaatggcgttccagaactgaaccga 1841
Query: 207 agccatttgtccagcatgcagataaatttttggttttctggtcaattcatagaaaaagac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 agccatttgtccagcatgcagataaatttttggttttctggtcaattcatagaaaaagac 1901
Query: 267 ttgtttgttcgaatgaacgcagacaagctagatgtcagaatactgacaacttcggtagaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 ttgtttgttcgaatgaacgcagacaagctagatgtcagaatactgacaacttcggtagaa 1961
Query: 327 attgtaaacgttatgaggtcttcaatagagagctttcaaaagaagctggcaaaaatcagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1962 attgtaaacgttatgaggtcttcaatagagagctttcaaaagaagctggcaaaaatcagt 2021
Query: 387 aatattaagaaaagttcgatatcaacacataatgtggctgagaatttaagtgacaaagtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 aatattaagaaaagttcgatatcaacacataatgtggctgagaatttaagtgacaaagtc 2081
Query: 447 tcaatcctttcaattcgttcaataaattgtattgccaaatatggaggtggtataataaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2082 tcaatcctttcaattcgttcaataaattgtattgccaaatatggaggtggtataataaat 2141
Query: 507 ctttacactcccgatgatattgcacaagattctcccaaatcgtcgctagagctcactagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2142 ctttacactcccgatgatattgcacaagattctcccaaatcgtcgctagagctcactagt 2201
Query: 567 ccatcaatagaagtttccttggactatatgcacaacttcccttcgcagaagcagcattgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 ccatcaatagaagtttccttggactatatgcacaacttcccttcgcagaagcagcattgg 2261
Query: 627 atcagaagtctagtaaatgttgaatcaactcacaacattttgttttcatcctgcgttcca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 atcagaagtctagtaaatgttgaatcaactcacaacattttgttttcatcctgcgttcca 2321
Query: 687 gttttagtaaatctcacaacagaaatccagaaacagatggaaagaattaactctganaag 746
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 2322 gttttagtaaatctcacaacagaaatccagaaacagatggaaagatttaactctgaaaag 2381
Query: 747 aagcaattggtccataaaactcaagaacagacaactaatactcagcgcatttctttcgac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 aagcaattggtccataaaactcaagaacagacaactaatactcagcgcatttctttcgac 2441
Query: 807 tacaaaaatttattcaaaaaaattgacacagcgatagtgataaacgttggagctc-aaat 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2442 tacaaaaatttattcaaaaaaattgacacagcgatagtgataaacgttggagctcaaaat 2501
Query: 866 atcacattgacatgtgagcccagagc-aaaattc-agcagacctaggcttcagtaacttc 923
|||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct: 2502 atcacattgacatgtgagccaagagcaaaaattcaagcagacctaggcttcagtaacttc 2561
Query: 924 a 924
|
Sbjct: 2562 a 2562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6882
Number of Sequences: 1807
Number of extensions: 6882
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)