BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF06FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig790 1150 0.0
>3x_Contig790
Length = 4570
Score = 1150 bits (580), Expect = 0.0
Identities = 635/647 (98%), Gaps = 5/647 (0%)
Strand = Plus / Plus
Query: 87 tagaaaaatataaaagaaaaaagtactttataaaagtaatattacaaaaaatatatatat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 tagaaaaatataaaagaaaaaagtactttataaaagtaatattacaaaaaatatatatat 2823
Query: 147 tcctgaaataactaaaaagtttaaaactaaaaaataaaaaaagattttaagatgattttt 206
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2824 tcctgaaataactaaaaagtttaaaactaaaaaataaaaaaagattntaagatgattttt 2883
Query: 207 attaaaagcatgcacgtgatatttcctagatttatttgttatatttttttcggtatttga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 attaaaagcatgcacgtgatatttcctagatttatttgttatatttttttcggtatttga 2943
Query: 267 aattagatatatttgagaatattcaagaaggttttttccagttaaagagattttgggata 326
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2944 a-ttagatatatttgagaatattcaagaaggttttttccagttaaagagattttgggata 3002
Query: 327 ttagaatcagccagcagttgttatattgataggttagcatttgaatatttaattaaattg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3003 ttagaatcagccagcagttgttatattgataggttagcatttgaatatttaattaaattg 3062
Query: 387 tcacttttgcagtttactagtatttaacattttgatgtaattattgaatgaatgtcgtta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3063 tcacttttgcagtttactagtatttaacattttgatgtaattattgaatgaatgtcgtta 3122
Query: 447 attacaaaaaatagatgttaaacttttaaaaaaaggttaaaacaattacatcagaaatta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3123 attacaaaaaatagatgttaaacttttaaaaaaaggttaaaacaattacatcagaaatta 3182
Query: 507 tgcatagaccctttgttcctgtcgaagagagaagttcgaggagataaagtcattagaagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 tgcatagaccctttgttcctgtcgaagagagaagttcgaggagataaagtcattagaagg 3242
Query: 567 tgcataatttaataaatacaaacaacctgtgaatagtctccccatgtaacgaagacagat 626
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3243 tgcataattcaataaatacaaacaacctgtgaatagtctcccaatgtaacgaagacagat 3302
Query: 627 gtaaaaaaaaaacatgggggtcaaattaaaatggcaaaacaaacaatataactatttaca 686
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 3303 gtaaaaaaaaaacatgggggtcaaa-taaaatggcaaaacaaacaataaaactatttaca 3361
Query: 687 gaaaggtttaggtttggaatgaattagaatcattggggagatatcga 733
| |||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct: 3362 g-aaggttta-gtttggaatgaatagaaatcatt-gggagatatcga 3405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,296
Number of Sequences: 1807
Number of extensions: 13296
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)