BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF06RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1563 991 0.0
3x_Contig1106 458 e-128
3x_Contig1381 101 3e-21
>3x_Contig1563
Length = 10839
Score = 991 bits (500), Expect = 0.0
Identities = 510/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 52 aaactcctccatgattctcttcttttccttttctctgtctatcagatagtcgtcgtcatc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10322 aaactcctccatgattctcttcttttccttttctctgtctatcagatagtcgtcgtcatc 10381
Query: 112 gtcatcgttatcctcctcttcatcttcctcttcatcgtcctcatcgtcctcatcgtcttg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10382 gtcatcgttatcctcctcttcatcttcctcttcatcgtcctcatcgtcctcatcgtcttg 10441
Query: 172 atcgtcttcgtcgtcctcatcttcttcatcgtcttcatcatcattttcttcatcctcgtc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10442 atcgtcttcgtcgtcctcatcttcttcatcgtcttcatcatcattttcttcatcctcgtc 10501
Query: 232 gtcgtcactgacttcttctgcactactctctaatgaatcattcatatcctgttcatcgcc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10502 gtcgtcactgacttcttctgcactactctctaatgaatcattcatatcctgttcatcgcc 10561
Query: 292 attatccgaatcagaactatcatcagtagctgagccatcagataaggaagatatatcact 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10562 attatccgaatcagaactatcatcagtagctgagccatcagataaggaagatatatcact 10621
Query: 352 gagttctagttgagcttcgtttagtcccaaatcaatttcaatgttgtcaaggactcgtat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10622 gagttctagttgagcttcgtttagtcccaaatcaatttcaatgttgtcaaggactcgtat 10681
Query: 412 agttccatgtgctgtatcaacttcttcctcgtcctcatcttcatcatcattctcatcatc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10682 agttccatgtgctgtatcaacttcttcctcgtcctcatcttcatcatcattctcatcatc 10741
Query: 472 attctcatcatcatcatcatcgtcttcatcatcatcatcgtcttcatcatcatcatctac 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10742 attctcatcatcatcatcatcgtcttcatcatcatcatcgtctttatcatcatcatctac 10801
Query: 532 atcttcattctcgcctctaccagtactagtca 563
||||||||||||||||||||||| ||||||||
Sbjct: 10802 atcttcattctcgcctctaccag-actagtca 10832
>3x_Contig1106
Length = 5510
Score = 458 bits (231), Expect = e-128
Identities = 293/309 (94%), Gaps = 4/309 (1%)
Strand = Plus / Plus
Query: 552 cagtactagtcatggcttcggcagaagtcacccncagctccttcaaaagcaagataagtt 611
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 cagtactagtcatggcttcggcagaagtcacccccagctccttcaaaagcaagataagtt 263
Query: 612 tttcatagcactgagaccaatccgatgacctcgagtggtcaaggtataacgcanagacat 671
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 264 tttcatagcactgagaccaatccgatgacctcgagtggtcagggtataacgcaaagacat 323
Query: 672 tttcaactttgaatgaaacttcatttcgt-aaggctgatccttacagaagatgtaatact 730
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 324 tttcaactttgaatgaaacttcattcggtaaaggctgatccttacagaagatgtaatact 383
Query: 731 cgaaaaattgattg-atatctttagtttcttcaatgcaaattcagacttacggtttatgc 789
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgaaaaattgaatgaatatctttagtttcttcaatgcaaattcagacttacggtttatgc 443
Query: 790 cccataagaattgttgaaatcaatgatattctgaaatagttggcagggtagtcttctttc 849
|| ||||| |||||||||||||||||||||||||| |||||| |||| |||| || |||
Sbjct: 444 ccaataag-attgttgaaatcaatgatattctgaagtagttgtcaggtaagtc-tccttc 501
Query: 850 attgatgaa 858
|||||||||
Sbjct: 502 attgatgaa 510
>3x_Contig1381
Length = 7318
Score = 101 bits (51), Expect = 3e-21
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 441 cgtcctcatcttcatcatcattctcatcatcattctcatcatcatcatcatcgtcttcat 500
|||| |||||||||||||||| |||||||||| ||||||||||||||||| || ||||
Sbjct: 5315 cgtcgtcatcttcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcat 5256
Query: 501 catcatcatcgtcttcatcatcatcat 527
|||||||||| || |||||||||||||
Sbjct: 5255 catcatcatcatcatcatcatcatcat 5229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,724
Number of Sequences: 1807
Number of extensions: 13724
Number of successful extensions: 1028
Number of sequences better than 1.0e-20: 3
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)