BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF07FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 878 0.0
>3x_Contig1720
Length = 19870
Score = 878 bits (443), Expect = 0.0
Identities = 479/487 (98%), Gaps = 3/487 (0%)
Strand = Plus / Minus
Query: 86 aaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagtgttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 aaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagtgttt 2185
Query: 146 tgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgctgcta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 tgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgctgcta 2125
Query: 206 ttattgaagttcatattttcacttatgaaatgattcataccattattcatatgcatgttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 ttattgaagttcatattttcacttatgaaatgattcataccattattcatatgcatgttc 2065
Query: 266 atagccataagtgactgatattctttaaaactctttggatggtttggagtaatgggggtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 atagccataagtgactgatattctttaaaactctttggatggtttggagtaatgggggtt 2005
Query: 326 attacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtcacgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 attacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtcacgc 1945
Query: 386 tcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaaaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 tcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaaaaaa 1885
Query: 446 gaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgccaga 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1884 gaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgcaaga 1825
Query: 506 tcgaaatcttaccaatttggaatttgagaaaacttttacattttgggactcctcgcttct 565
|||||||| ||||||||||||| |||| |||||||||||| || ||||||||||| |||
Sbjct: 1824 tcgaaatcataccaatttggaa-ttgaagaaacttttacatctt-ggactcctcgc-tct 1768
Query: 566 ttatgaa 572
|||||||
Sbjct: 1767 ttatgaa 1761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,601
Number of Sequences: 1807
Number of extensions: 18601
Number of successful extensions: 2227
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)