BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF07RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig738 733 0.0
>3x_Contig738
Length = 1897
Score = 733 bits (370), Expect = 0.0
Identities = 391/397 (98%), Gaps = 2/397 (0%)
Strand = Plus / Plus
Query: 47 aactatatatctgttagcttttgcaggatgtaactacattttcctttgatttttgaatgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 aactatatatctgttagcttttgcaggatgtaactacattttcctttgatttttgaatgt 1319
Query: 107 taaagttacgttgtaagtttacatatgtatatttagttcaactattcattgcttccttaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 taaagttacgttgtaagtttacatatgtatatttagttcaactattcattgcttccttaa 1379
Query: 167 ttgtttgtttctccgatggctaatatgcgcaaccacatgtgggaggaagaatgcaaaaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 ttgtttgtttctccgatggctaatatgcgcaaccacatgtgggaggaagaatgcaaaaag 1439
Query: 227 gtgcagatgttcatagaatgtatatacatcttaattcttaatgatttcttgtcttggaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 gtgcagatgttcatagaatgtatatacatcttaattcttaatgatttcttgtcttggaat 1499
Query: 287 tattatacaattgctcgcgttcttgaataccagagtgtatgtgtaagagcttacaaatac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 tattatacaattgctcgcgttcttgaataccagagtgtatgtgtaagagcttacaaatac 1559
Query: 347 ggtacattgtcagatttattattcgtttgtctggtaaaactgttgtaacttgggttttcc 406
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1560 ggtacattgtcagatttattattcgtttgtctggtaaaactgttgtagcttgggttttcg 1619
Query: 407 ttcaaaaattggggttgctaccagaaaaaccttgata 443
|||||| || |||||||||||||| |||||||||||
Sbjct: 1620 ttcaaatat--gggttgctaccagagaaaccttgata 1654
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,171
Number of Sequences: 1807
Number of extensions: 17171
Number of successful extensions: 161
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)