BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZF08FM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1428                                                        1152   0.0  

>3x_Contig1428 
          Length = 9146

 Score = 1152 bits (581), Expect = 0.0
 Identities = 716/746 (95%), Gaps = 14/746 (1%)
 Strand = Plus / Minus

                                                                        
Query: 86   accagtacttaattcgtcatacgtatgtaaatataccaaatt-caggcagaaccagttgc 144
            |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 8994 accagtacttaattcgtcatacgtatgtaaatataccaaaatacaggcagaaccagttgc 8935

                                                                        
Query: 145  catttaaattagcagttgtaaacctcaataactttctttacctaaattccgttgttgcat 204
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8934 catttaaattagcagttgtaaacctcaatcactttctttacctaaattccgttgttgcat 8875

                                                                        
Query: 205  cgcagcgttctttacctaaacaattaacttttcacgtccagctccatgactttaatgaaa 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8874 cgcagcgttctttacctaaacaattaacttttcacgtccagctccatgactttaatgaaa 8815

                                                                        
Query: 265  aattgtgtgaaatatagggaaaagatatatcaactgatctcattgcaactttttttttaa 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8814 aattgtgtgaaatatagggaaaagatatatcaactgatctcattgcaactttttttttaa 8755

                                                                        
Query: 325  acgtagaccagaataacaggaataacgctcaatcagcacatctaagaatccttagcggag 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8754 acgtagaccagaataacaggaataacgctcaatcagcacatctaagaatccttagcggag 8695

                                                                        
Query: 385  tcgctacagctgaaatataattcgtatagacgttagcgtcaagaaatagtagatacacaa 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8694 tcgctacagctgaaatataattcgtatagacgttagcgtcaagaaatagtagatacacaa 8635

                                                                        
Query: 445  tat-aaattgacaagcaatggtttcattgacaaagagagtattatttgaagttattccga 503
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8634 tatcaaattgacaagcaatggtttcattgacaaagagagtattatttgaagttattccga 8575

                                                                        
Query: 504  atccacctgatgagacgactttgactttatcctctaccaccaacaaaggtcactacatat 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8574 atccacctgatgagacgactttgactttatcctctaccaccaacaaaggtcactacatat 8515

                                                                        
Query: 564  ccgttagacctttcgtcaatgctgaaggtaaggaattcccattttgatgggctttttgtg 623
            ||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||
Sbjct: 8514 ccgttagacctttcgtcaatgctgaaggtaaggaattcccatttgaatgggcttttggtg 8455

                                                                        
Query: 624  gtacatctgatcacattgaattgaaaaaaatcaatgagagagccaacttctttaaacttc 683
            |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 8454 gtacatctgatcacattgaattgaaaaaaatcaatgagagagccaactcctt-aaacttc 8396

                                                                        
Query: 684  atttntaagttcgatacaaatgttgaagttgaatggtcccagaaactcatcgtgggtgtt 743
            | || |||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||
Sbjct: 8395 aattttaagttcgatacaaatgt-gaagttgaatgttcc-agaaactcatcgtgg-tgtt 8339

                                                                        
Query: 744  tattaaaaacggtctttaagacttgtggatttcggttttggttgaaagaaactggtttct 803
               | ||||| ||||| |||||||| ||||| |||||| ||||||| ||||||||||   
Sbjct: 8338 a--tcaaaaccgtcttcaagacttg-ggattccggttt-ggttgaa-gaaactggttc-- 8286

                                      
Query: 804  tgtttttccattggggaaccgaaggt 829
            |||||| |||| ||||||||||||||
Sbjct: 8285 tgttttcccat-ggggaaccgaaggt 8261


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7436
Number of Sequences: 1807
Number of extensions: 7436
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)