BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZF09FM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig604                                                         1221   0.0  

>3x_Contig604 
          Length = 2699

 Score = 1221 bits (616), Expect = 0.0
 Identities = 640/644 (99%), Gaps = 3/644 (0%)
 Strand = Plus / Plus

                                                                        
Query: 85   ttcaaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttg 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 ttcaaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttg 1475

                                                                        
Query: 145  gcatcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgtttta 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1476 gcatcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgtttta 1535

                                                                        
Query: 205  gaaacatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgc 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gaaacatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgc 1595

                                                                        
Query: 265  agggtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccaga 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 agggtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccaga 1655

                                                                        
Query: 325  tcatcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatg 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 tcatcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatg 1715

                                                                        
Query: 385  gatccagatcgaagcggaaacaaaatactaatggattttttattcttatcaacagtcatt 444
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1716 gatccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcatt 1775

                                                                        
Query: 445  ggtcggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgata 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 ggtcggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgata 1835

                                                                        
Query: 505  ctcatcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatt 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 ctcatcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatt 1895

                                                                        
Query: 565  tcactagataaacgcttgtacaaaaaacaatttgtcaaagaaaacgattaattctaatga 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 tcactagataaacgcttgtacaaaaaacaatttgtcaaagaaaacgattaattctaatga 1955

                                                                        
Query: 625  ttagcaaagctgattgtagaacagttttagactctcttc-agtgtacgtatttatggatt 683
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1956 ttagcaaagctgattgtagaacagttttagactctcttcaagtgtacgtatttatggatt 2015

                                                        
Query: 684  tcctttgtg-tacaaaacatgtgtactaaa-ttcatacgctttt 725
            ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 2016 tcctttgtgttacaaaacatgtgtactaaatttcatacgctttt 2059


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7533
Number of Sequences: 1807
Number of extensions: 7533
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)