BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF10FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig612 1356 0.0
>3x_Contig612
Length = 1930
Score = 1356 bits (684), Expect = 0.0
Identities = 739/750 (98%), Gaps = 6/750 (0%)
Strand = Plus / Minus
Query: 86 tgtacattgtcaaacatgcgtctggactgaatttaactaaccaatcgagtaaactcttgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tgtacattgtcaaacatgcgtctggactgaatttaactaaccaatcgagtaaactcttgt 887
Query: 146 gtatcttatttctatcatccaattgaacaacatctgtatccatatcaacatcttccatac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gtatcttatttctatcatccaattgaacaacatctgtatccatatcaacatcttccatac 827
Query: 206 atttcaggaaagcagatggtctctgtaatataaatatgaagaacatgaatatcaaatagt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 atttcaggaaagcagatggtctctgtaatataaatatgaagaacatgaatatcaaatagt 767
Query: 266 cctcgtttggaccaaacattaattcaaagtagaatagcttgaagaaaaccactaatgacg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 cctcgtttggaccaaacattaattcaaagtagaatagcttgaagaaaaccactaatgacg 707
Query: 326 ataacgaagtagctctagtatatggaatcaaaaggcccttgcatatcaaactgatcataa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ataacgaagtagctctagtatatggaatcaaaaggcccttgcatatcaaactgatcataa 647
Query: 386 cgtgcgagaaattgctttcagtgactcttaaatcccccatcgcttcaacttgtctcaaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cgtgcgagaaattgctttcagtgactcttaaatcccccatcgcttcaacttgtctcaaga 587
Query: 446 tattctcaccaaaatttctttgagccataagctgtttgatgaggggttcaggaatctctc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tattctcaccaaaatttctttgagccataagctgtttgatgaggggttcaggaatctctc 527
Query: 506 ccctatccatcttttccatgctacccagagacaagtgttgagcagtacttgacatgaata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccctatccatcttttccatgctacccagagacaagtgttgagcagtacttgacatgaata 467
Query: 566 acaaaccactttgataaatcatcatatttatagagaaggaaatgctgctggcaagccaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 acaaaccactttgataaatcatcatatttatagagaaggaaatgctgctggcaagccaga 407
Query: 626 at-atttangcaacaatggagactgcggatcgacaccgataactgcttttgtgtaagtaa 684
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ataatttaggcaacaatggagactgcggatcgacaccgataactgcttttgtgtaagtaa 347
Query: 685 agaatgtggagatcacgaaaaagatctgttcgtcattgacatcaggcatggcaacaatca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agaatgtggagatcacgaaaaagatctgttcgtcattgacatcaggcatggcaacaatca 287
Query: 745 ccatactcttgtctt-acaagttgaagcagc-agccattcgatatttcttncttcgaaac 802
|||||||| |||||| |||||||| |||||| |||||| ||||||| ||| |||||||||
Sbjct: 286 ccatactc-tgtcttaacaagttg-agcagcaagccatccgatattccttccttcgaaac 229
Query: 803 aatacct-aaatcatcttagctcgagcaga 831
||||||| |||||||| |||||||||||||
Sbjct: 228 aatacctaaaatcatcatagctcgagcaga 199
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6143
Number of Sequences: 1807
Number of extensions: 6143
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)