BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZF10RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1322 1187 0.0
>3x_Contig1322
Length = 7535
Score = 1187 bits (599), Expect = 0.0
Identities = 652/663 (98%), Gaps = 5/663 (0%)
Strand = Plus / Plus
Query: 49 cttcagagtatacatcagaaaatgtctcggtaccgttcaagattctagcttcatgctccc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 cttcagagtatacatcagaaaatgtctcggtaccgttcaagattctagcttcatgctccc 1919
Query: 109 tttgctcatctttggttagcagtatgacgttttgaatgctcactggctttgttggatccc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 tttgctcatctttggttagcagtatgacgttttgaatgctcactggctttgttggatccc 1979
Query: 169 atttggataaagttaacctagtagaatagttactgattggtgatttacctctccacactt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 atttggataaagttaacctagtagaatagttactgattggtgatttacctctccacactt 2039
Query: 229 cctccacaatgtatccaatgtcacttagtgcaattggaattctttggtctttttgaccaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 cctccacaatgtatccaatgtcacttagtgcaattggaattctttggtctttttgaccaa 2099
Query: 289 tacgcgtcatttgaccagctaaggattgataaatgccatcgtacaatttgattctgttct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 tacgcgtcatttgaccagctaaggattgataaatgccatcgtacaatttgattctgttct 2159
Query: 349 taccttctattggttccattgggtaaccgctaatcttacataagacccaagtagcaatag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 taccttctattggttccattgggtaaccgctaatcttacataagacccaagtagcaatag 2219
Query: 409 tcaacccaaaaacacctggcatggttcccaagacgggtagaattctgacacggaaatcct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 tcaacccaaaaacacctggcatggttcccaagacgggtagaattctgacacggaaatcct 2279
Query: 469 ttaatgcacttagttgatccacattacccttctggaattcttcttctggc-acggtaata 527
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2280 ttaatgcacttagttgatccacattacccttctggaattcttcttctggcaacggtaata 2339
Query: 528 attttgccttttttggatctggtttctctgcactaaagacagcaggaatgccccttggtg 587
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2340 attttgccttttttggatctggtttctctgcactaaagacagcaggaatg-cccttggtg 2398
Query: 588 atacctctttgttttagtcttctttttacagtacgtgctagtggatcttcttttgtcata 647
|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct: 2399 atacctctttgttttagtcttcttctaacagtacgtgctagtggatcttcttctgtcata 2458
Query: 648 gtcaaatctcccacatttaattctaggttgaatcacttttagttgccgcttcccatggat 707
||||||||||| ||| ||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 2459 gtcaaatctccaaca-ttaattcta-gttggatcacttttagttgcggc-tcccatggat 2515
Query: 708 gct 710
|||
Sbjct: 2516 gct 2518
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,364
Number of Sequences: 1807
Number of extensions: 15364
Number of successful extensions: 295
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)