BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG01FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1211 0.0
>3x_Contig1755
Length = 22936
Score = 1211 bits (611), Expect = 0.0
Identities = 611/611 (100%)
Strand = Plus / Minus
Query: 86 taaattctcagctcactgatttaaattgtcaaaagtgttattgatggctcctaacacttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8763 taaattctcagctcactgatttaaattgtcaaaagtgttattgatggctcctaacacttc 8704
Query: 146 aggcactatcgatagttccaattcttcttaattgacttttgctttccagccacaatatcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8703 aggcactatcgatagttccaattcttcttaattgacttttgctttccagccacaatatcg 8644
Query: 206 aacaaatgttctaccccaaaacacaaactaacgaaccaacacttaacctctaaagcgtgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8643 aacaaatgttctaccccaaaacacaaactaacgaaccaacacttaacctctaaagcgtgt 8584
Query: 266 caatactgtaacaaatatcgaatgattcacaacacagatgctgagccctaataatcacac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8583 caatactgtaacaaatatcgaatgattcacaacacagatgctgagccctaataatcacac 8524
Query: 326 taggaagcagaagaaacacacgggtacgtcagaaaccacaacattcaccgattcgttgat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8523 taggaagcagaagaaacacacgggtacgtcagaaaccacaacattcaccgattcgttgat 8464
Query: 386 tctcatgataataatcaacatgctaaatttcgattttcaccggaaggtctagatttgaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8463 tctcatgataataatcaacatgctaaatttcgattttcaccggaaggtctagatttgaat 8404
Query: 446 tttcatgcaaagagatagagaaaaagccgcccatgcccgggtaacaaatgttcttctggc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8403 tttcatgcaaagagatagagaaaaagccgcccatgcccgggtaacaaatgttcttctggc 8344
Query: 506 ttcggaaatgaaagtattaaacacgaagcctgacatcctgtctcgaaaagttgcgaaaca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8343 ttcggaaatgaaagtattaaacacgaagcctgacatcctgtctcgaaaagttgcgaaaca 8284
Query: 566 gctcggtaccggtatcattacgttgttaaaggggcgatataatggttggaacttgcgttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8283 gctcggtaccggtatcattacgttgttaaaggggcgatataatggttggaacttgcgttt 8224
Query: 626 tgtttctggagtgcattgtataagagttactgaacaactactagcattttaataagctaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 tgtttctggagtgcattgtataagagttactgaacaactactagcattttaataagctaa 8164
Query: 686 ttagatcaatc 696
|||||||||||
Sbjct: 8163 ttagatcaatc 8153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,413
Number of Sequences: 1807
Number of extensions: 15413
Number of successful extensions: 265
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)