BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG01RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1505 1620 0.0
>3x_Contig1505
Length = 10303
Score = 1620 bits (817), Expect = 0.0
Identities = 824/825 (99%), Gaps = 1/825 (0%)
Strand = Plus / Minus
Query: 48 ctgaaaaatcttcc-cagctaggaatcaggtgcctgactgttacaagcctggtcgattct 106
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3893 ctgaaaaatcttccacagctaggaatcaggtgcctgactgttacaagcctggtcgattct 3834
Query: 107 gctagtattgttgcgaatgttgctggaaatcagaacacagctactaaaaaaagaaggcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3833 gctagtattgttgcgaatgttgctggaaatcagaacacagctactaaaaaaagaaggcta 3774
Query: 167 gaagcaggggaagacaaggtattgctgaatgagctggattccaaacggattcaaatttgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 gaagcaggggaagacaaggtattgctgaatgagctggattccaaacggattcaaatttgt 3714
Query: 227 gtacaatctaatccgatgaatgacttggaagttggaaaactttgtcttgatcatctttcg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 gtacaatctaatccgatgaatgacttggaagttggaaaactttgtcttgatcatctttcg 3654
Query: 287 aaattgttagattctgtcggactcaattctgaagggagtgttaatgaaaacgctaaattc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 aaattgttagattctgtcggactcaattctgaagggagtgttaatgaaaacgctaaattc 3594
Query: 347 tggaagccattaggtgatgtttacgttgctacttcggaggctatagatgcaatatcgttg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 tggaagccattaggtgatgtttacgttgctacttcggaggctatagatgcaatatcgttg 3534
Query: 407 acgataaataaagttctaggatttccgatggtatttgagtatattgatgttcaatctctt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 acgataaataaagttctaggatttccgatggtatttgagtatattgatgttcaatctctt 3474
Query: 467 aaaaaaatactgggtctttgcactagaaatatcaaaagaatcctagcatatcaatcagac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 aaaaaaatactgggtctttgcactagaaatatcaaaagaatcctagcatatcaatcagac 3414
Query: 527 aatgaatctgagtccttagatctgaataaccttacgtttggttgcgcatttttaattctt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 aatgaatctgagtccttagatctgaataaccttacgtttggttgcgcatttttaattctt 3354
Query: 587 gaagttatgatgatagatctcaaatccgcaaaccttcagttagaagaatattacaatgct 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 gaagttatgatgatagatctcaaatccgcaaaccttcagttagaagaatattacaatgct 3294
Query: 647 gtgttctcagcgcttgataatgcgctcgagaagttacatgtttcggacaactcaagaggt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 gtgttctcagcgcttgataatgcgctcgagaagttacatgtttcggacaactcaagaggt 3234
Query: 707 attaatgcagatattggaaatatattcttattcatcaatttattggaaaagtttgtcgcc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 attaatgcagatattggaaatatattcttattcatcaatttattggaaaagtttgtcgcc 3174
Query: 767 tctcaatcatacttggacgaaatgtttttgatcaaatcagtgtgcatttgctgtgatatg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3173 tctcaatcatacttggacgaaatgtttttgatcaaatcagtgtgcatttgctgtgatatg 3114
Query: 827 ctactacacagatgctatcaacacttaaacactaatgtgctttta 871
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3113 ctactacacagatgctatcaacacttaaacactaatgtgctttta 3069
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6812
Number of Sequences: 1807
Number of extensions: 6812
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)