BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG02FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1384 0.0
>3x_Contig1142
Length = 5741
Score = 1384 bits (698), Expect = 0.0
Identities = 729/736 (99%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 88 taatattgagggtcgttctgatatggcagctgttgtcttacaagaaggtatttcccacat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 taatattgagggtcgttctgatatggcagctgttgtcttacaagaaggtatttcccacat 718
Query: 148 ttgcttgatcaattcattctctacggtattaaagcataagatcgaatatagcattccaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgcttgatcaattcattctctacggtattaaagcataagatcgaatatagcattccaaa 778
Query: 208 gaagaagagaggtacagatataatgaagtttgatgacaaggtagagaaattttacagagc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaagaagagaggtacagatataatgaagtttgatgacaaggtagagaaattttacagagc 838
Query: 268 cacttatgcgtccatggttagacatttcgattttgacacactgaaatgcatcataatttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cacttatgcgtccatggttagacatttcgattttgacacactgaaatgcatcataatttg 898
Query: 328 ttcaccagggttttacgcaaagactttatatgacaaggtaatgcaatatgcacaagaaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ttcaccagggttttacgcaaagactttatatgacaaggtaatgcaatatgcacaagaaga 958
Query: 388 tcagaataaaaaaatccttgcaaatactggcaagtttttggtcgcacattgctctacagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 tcagaataaaaaaatccttgcaaatactggcaagtttttggtcgcacattgctctacagg 1018
Query: 448 atacttacaaggtatagatgaggtattaaaggatccggcttataaacataagcttgaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 atacttacaaggtatagatgaggtattaaaggatccggcttataaacataagcttgaaga 1078
Query: 508 tgcaaaaaattcaaaggaagccttggtaatggacgattttttggatcatttaaacaaaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 tgcaaaaaattcaaaggaagccttggtaatggacgattttttggatcatttaaacaaaga 1138
Query: 568 tgatttcaaagcttggtatggtgaacatgagatcacaaaagcggctgagcttgctgctat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 tgatttcaaagcttggtatggtgaacatgagatcacaaaagcggctgagcttgctgctat 1198
Query: 628 tgatactttgntaatttcagattcatggatgcggtcagatgatgttaatgttaggaaaaa 687
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 tgatactttgttaatttcagattcatggatgcggtcagatgatgttaatgttaggaaaaa 1258
Query: 688 atcattanatcttatcaatgaagtggaacaaaccggtggttaaagc-tatatctttcagt 746
||||||| ||||||||||||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 1259 atcattaaatcttatcaatgaagtggaacaaaccggtgg-taaagcttatatc-ttcagt 1316
Query: 747 tcactacacaatattggcgaagagttagatcgtctaaacgggctcgcttgtattttgaaa 806
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1317 tcactacacaatattggcgaagagttagatcgtctaaccgggctcgcttgtattttgaaa 1376
Query: 807 tattcggttccagatt 822
||| ||||||||||||
Sbjct: 1377 tatccggttccagatt 1392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7254
Number of Sequences: 1807
Number of extensions: 7254
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)