BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1639 0.0
>3x_Contig1595
Length = 10795
Score = 1639 bits (827), Expect = 0.0
Identities = 860/866 (99%), Gaps = 4/866 (0%)
Strand = Plus / Minus
Query: 48 tgagatcgggatgaaccgtttggaatacttgatatcgtctttaagccatctcaaaaattt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 tgagatcgggatgaaccgtttggaatacttgatatcgtctttaagccatctcaaaaattt 1588
Query: 108 aaacataacggttcgacttggaaattgcagtattcctccagcaacagggcaatgatggtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 aaacataacggttcgacttggaaattgcagtattcctccagcaacagggcaatgatggtc 1528
Query: 168 atctttatccttgtcatataccactgattggtcttgaatctctaatttcaacgttttcca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 atctttatccttgtcatataccactgattggtcttgaatctctaatttcaacgttttcca 1468
Query: 228 ttgtttcaattccttgatcaggcttgcatccctccccttattctctttacattgtcctag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 ttgtttcaattccttgatcaggcttgcatccctccccttattctctttacattgtcctag 1408
Query: 288 taaagattcataccgtttcagcaagtgatctaaacttgtggtatcaaccttgtacgactt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 taaagattcataccgtttcagcaagtgatctaaacttgtggtatcaaccttgtacgactt 1348
Query: 348 caaactctcagtaatcttctcaaccacttgttcccccactatagttactttagggtctgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 caaactctcagtaatcttctcaaccacttgttcccccactatagttactttagggtctgg 1288
Query: 408 tgcctttttcatcgacagcagcgatgcgttccacacattattcaaatgattcaagaactg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 tgcctttttcatcgacagcagcgatgcgttccacacattattcaaatgattcaagaactg 1228
Query: 468 tgaaagccgcattatcgattgtatatcttgtgtaatcgcatcgtataacgaattaacact 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 tgaaagccgcattatcgattgtatatcttgtgtaatcgcatcgtataacgaattaacact 1168
Query: 528 cacggtgcttacggggctccaaaaagtgtaccttaaatccattactttggtgtgtgggat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 cacggtgcttacggggctccaaaaagtgtaccttaaatccattactttggtgtgtgggat 1108
Query: 588 gcctaccacttacagagaggaatgttgttcgtgtttcgtaaatagtatccaatgtatctt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 gcctaccacttacagagaggaatgttgttcgtgtttcgtaaatagtatccaatgtatctt 1048
Query: 648 aaataagcaagtcatcgacttttttcagcgaatactcttgaaagatttcaatagattgac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 aaataagcaagtcatcgacttttttcagcgaatactcttgaaagatttcaatagattgac 988
Query: 708 aacacatcanggcattgccatgcatctactatgaatgcaagtatgtacggtttattacac 767
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aacacatcagggcattgccatgcatctactatgaatgcaagtatgtacggtttattacac 928
Query: 768 gtgtatatatattatcaaagcaacaacccttcatctttcttgctatccttcaatccaaat 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 gtgtatatatattatcaaagcaacaacccttcatctttcttgctatccttcaatccaaat 868
Query: 828 agttntgcctatggaatagaagtattcctct-atgtaatcgatgacgatctttggctaac 886
|||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 867 agtt-tgcctatggaatagaagtatt-ctctaatgtaatcgatgacgatc-ttggctaaa 811
Query: 887 cccttagctcttcttctcacacctct 912
||||||||||||||||||||||||||
Sbjct: 810 cccttagctcttcttctcacacctct 785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6430
Number of Sequences: 1807
Number of extensions: 6430
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)