BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG03FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1221 0.0
3x_Contig178 833 0.0
3x_Contig1797 137 5e-32
3x_Contig1750 129 1e-29
>3x_Contig1092
Length = 2520
Score = 1221 bits (616), Expect = 0.0
Identities = 648/656 (98%), Gaps = 2/656 (0%)
Strand = Plus / Plus
Query: 88 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 148 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 208 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 268 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 328 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 388 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 448 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 508 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 568 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 773
Query: 628 cacgtgatactacttggac-aaggccacctagccacaactcacttcacaatattctataa 686
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 833
Query: 687 ggatccaatttggttgtattgatgttccctgacgaaattttatttgttacgggatt 742
|||||||| ||||||||||||||||||| |||||||| ||| ||| ||||||||
Sbjct: 834 ggatccaa-ttggttgtattgatgttcctgaacgaaattatatatgtaacgggatt 888
>3x_Contig178
Length = 1315
Score = 833 bits (420), Expect = 0.0
Identities = 479/496 (96%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 88 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 147
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 148 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 207
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 208 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 268 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 327
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 328 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 387
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 388 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 448 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 508 tctattg-aacagagataagcagag-gcgtaacgagaaaattaatcttcaatgggactta 565
||||||| |||| | ||||||| || | |||| | ||||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 566 gtcaaaactgtatcag 581
||||||||||||||||
Sbjct: 376 gtcaaaactgtatcag 361
>3x_Contig1797
Length = 34782
Score = 137 bits (69), Expect = 5e-32
Identities = 119/133 (89%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 581 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 640
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 641 ttgga-caaggccacctagccacaactcacttcacaatattctataaggatccaatttgg 699
||| | |||||||| |||||||| ||||||||| ||||||||| || | ||||| ||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaa-ttgg 32438
Query: 700 ttgtattgatgtt 712
|||||||||||||
Sbjct: 32437 ttgtattgatgtt 32425
>3x_Contig1750
Length = 14427
Score = 129 bits (65), Expect = 1e-29
Identities = 118/133 (88%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 581 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 640
|||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 641 ttgga-caaggccacctagccacaactcacttcacaatattctataaggatccaatttgg 699
||| | |||||| | |||||||||||||||||| ||||||||| || | ||||| ||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaa-ttgg 13633
Query: 700 ttgtattgatgtt 712
|||||||||||||
Sbjct: 13634 ttgtattgatgtt 13646
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8292
Number of Sequences: 1807
Number of extensions: 8292
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 4
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)