BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZG03RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1366 0.0
3x_Contig634 208 1e-53
>3x_Contig1743
Length = 20172
Score = 1366 bits (689), Expect = 0.0
Identities = 699/701 (99%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 43 gctttgatttgcggtggtgttggtattggcatgatgttccatatatcgagtacattagct 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19452 gctttgatttgcggtggtgttggtattggcatgatgttccatatatcgagtacattagct 19511
Query: 103 agtgtactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19512 agtgtactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaag 19571
Query: 163 attagagcaatctctagagaattacaacaggcctctggtaatcttaccaaagtctcagag 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 19572 attagagcaatctctagagaattacaacaggcctctggtaatcttaccaaagtcgcagag 19631
Query: 223 gaacaactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgcat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19632 gaacaactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgcat 19691
Query: 283 cgctataacaacgctgtaagacaggtatttaatgttggaaagaaggaagctttcacaaat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19692 cgctataacaacgctgtaagacaggtatttaatgttggaaagaaggaagctttcacaaat 19751
Query: 343 gcgacttttttcagtagtacaaatgtgttgggtgatttctcatttttgctggtattggcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19752 gcgacttttttcagtagtacaaatgtgttgggtgatttctcatttttgctggtattggcc 19811
Query: 403 tatggatcgcatcttgttttacaaggaaaccttacaatcggtgatttaactgcgttcatg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19812 tatggatcgcatcttgttttacaaggaaaccttacaatcggtgatttaactgcgttcatg 19871
Query: 463 ctctatactgaatacactggaagtgcagtatttggtctttccaccttttactcggaattg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19872 ctctatactgaatacactggaagtgcagtatttggtctttccaccttttactcggaattg 19931
Query: 523 atgaagggtgctggtgcagctacgagattgtttgaattgcttgattacaaacctactatt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19932 atgaagggtgctggtgcagctacgagattgtttgaattgcttgattacaaacctactatt 19991
Query: 583 aaatcaactaccgggaaggcgtttaaaccgttaaatggtaaagttgagtttcagcatgtt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19992 aaatcaactaccgggaaggcgtttaaaccgttaaatggtaaagttgagtttcagcatgtt 20051
Query: 643 tctttcagttacccaacaagaaaaacaaatcaaatcttttaaggatctcaactttacaat 702
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 20052 tctttcagttacccaacaagaaaaacaaatcaaatc-tttaaggatctcaactttacaat 20110
Query: 703 agagccaggttctaatgtatgtattgtaggtccatcaggaa 743
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 20111 agagccaggttctaatgtatgtattgtaggtccatcaggaa 20151
>3x_Contig634
Length = 1748
Score = 208 bits (105), Expect = 1e-53
Identities = 164/180 (91%), Gaps = 3/180 (1%)
Strand = Plus / Minus
Query: 765 cgttattgttgaggtactacaatccaacatccggtaaaatcttggttgatggccaagata 824
||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||
Sbjct: 1747 cgttattgttgaggtactaacaaacaacaaacggtaaattcttggttgatggccaagata 1688
Query: 825 ttacaaaattaagttcgaaatcccttag-agacaacttggtgtgggtacaacaagagcca 883
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1687 ttacaaaattaagttcgaaatcccttagaagacaacttggtgt-ggtacaacaagagcca 1629
Query: 884 atattaaagttctgttactataagaaagaatattacatattgtgtctctaggncaccttc 943
||||||| | |||| |||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 1628 atattaatg-tctggtactataagagagaatattacatatggtgtctctaggcaaccttc 1570
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6742
Number of Sequences: 1807
Number of extensions: 6742
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)