BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZG04FM1.SCF screened BAC_end (937 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig449 561 e-160 >3x_Contig449 Length = 1952 Score = 561 bits (283), Expect = e-160 Identities = 348/362 (96%), Gaps = 6/362 (1%) Strand = Plus / Minus Query: 406 ttgactaatgataaatcattagaagtcagatgtaatgcttcatacggtgttggtttgttg 465 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1952 ttgactaatgatanaatattagaagtcagatgtaatgcttcatacggtgttggtttgttg 1893 Query: 466 attgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttatac 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1892 attgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttatac 1833 Query: 526 gaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaaa 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1832 gaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaaa 1773 Query: 586 gaaatcgttgacagaacttttctcca-cgtatgcggatgtgtgggccag-atgatcctga 643 |||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| ||| Sbjct: 1772 gaaatcgttgacagaacttt-ctccaacgtatgcggatgtgt-ggccagaatgatcttga 1715 Query: 644 agca-caaaacctagtttcactggaacacaccattccagctctactctcgcacttggcat 702 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1714 agcaccaaaacctagttccactggaacacaccattccagctctactctcgcacttgccat 1655 Query: 703 tcaacactggattcgaagaatacgatccgatctttaaattattctttgaagttattccaa 762 ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct: 1654 tcaacactgcattcgaagaatacgatccgatcttcaaattattc-ttgaagttattccaa 1596 Query: 763 ga 764 || Sbjct: 1595 ga 1594 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7436 Number of Sequences: 1807 Number of extensions: 7436 Number of successful extensions: 47 Number of sequences better than 1.0e-20: 1 length of query: 937 length of database: 10,358,551 effective HSP length: 16 effective length of query: 921 effective length of database: 10,329,639 effective search space: 9513597519 effective search space used: 9513597519 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)