BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZG04FM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig449                                                          561   e-160

>3x_Contig449 
          Length = 1952

 Score =  561 bits (283), Expect = e-160
 Identities = 348/362 (96%), Gaps = 6/362 (1%)
 Strand = Plus / Minus

                                                                        
Query: 406  ttgactaatgataaatcattagaagtcagatgtaatgcttcatacggtgttggtttgttg 465
            ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 ttgactaatgatanaatattagaagtcagatgtaatgcttcatacggtgttggtttgttg 1893

                                                                        
Query: 466  attgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttatac 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 attgaatattcatcattcgatgtttctgctatctattctccagttctaaaatccttatac 1833

                                                                        
Query: 526  gaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaaa 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 gaaattttgagcgttgctgacgaaaagaacttagctactgaagatgatgaagctaccaaa 1773

                                                                        
Query: 586  gaaatcgttgacagaacttttctcca-cgtatgcggatgtgtgggccag-atgatcctga 643
            |||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| |||
Sbjct: 1772 gaaatcgttgacagaacttt-ctccaacgtatgcggatgtgt-ggccagaatgatcttga 1715

                                                                        
Query: 644  agca-caaaacctagtttcactggaacacaccattccagctctactctcgcacttggcat 702
            |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1714 agcaccaaaacctagttccactggaacacaccattccagctctactctcgcacttgccat 1655

                                                                        
Query: 703  tcaacactggattcgaagaatacgatccgatctttaaattattctttgaagttattccaa 762
            ||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 1654 tcaacactgcattcgaagaatacgatccgatcttcaaattattc-ttgaagttattccaa 1596

              
Query: 763  ga 764
            ||
Sbjct: 1595 ga 1594


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7436
Number of Sequences: 1807
Number of extensions: 7436
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)